Another better solution is to edit the /etc/mdadm/mdadm.conf file and add your 
ARRAY variables
r...@serv02:~# cat /etc/mdadm/mdadm.conf | grep ARRAY
ARRAY /dev/md1 devices=/dev/sda1,/dev/sdb1
ARRAY /dev/md2 devices=/dev/sda2,/dev/sdb2

Then just rebuild the initramfs of the kernel you want to run, the easiest is 
to reinstall linux-image using apt(itude).
This solved the problem on our machine.
But it still doesn't explain why the array is not autodetected...

-- 
no block devices found after an upgrade from 8.10 to 9.04 on a soft RAID1 system
https://bugs.launchpad.net/bugs/358054
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