If you want users who cannot handle a notification icon to update the
system, then a pop-up window might not be any better, because every
regular window that pops up somewhere is closed without reading by
default by at least 90% of the users. For those users, an automated
update process should be default. That is way more efficient than a pop-
up window. Everyone else will just keep handling updates as he has done
so far, and a constant reminder is just exactly what you need. And that
in turn is exactly what the notification area is for. It may be
overloaded by apps, but (as was said before, but I want to emphasize it
again) update notifications are _the_ message that need to go there. I
would always close the pop-up window, because I don't want to update
right now and I don't want it sitting in my Alt+tab list and then forget
about the update.

What is also forgotten is that ubuntu already has a large user base
which do not know much about their OS. As several people here already
exemplified, they will be irritated by this new behavior. I think, the
best compromise would be to have the old behavior as standard, and if no
update takes place after a fixed amount of time, then remind the user
additionally with a pop-up window.

-- 
[Jaunty] Update Notifier icon would provide useful status information
https://bugs.launchpad.net/bugs/332945
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