An update on my end:

After a week of running xorg from 8.04 (hardy), I'm still seeing the
problem.  It's not as frequent as it was, but it's still happening.

With that, I have been able to apply the fix described above (using the
keyboard to move a window across the screens & back), which generally
seems to work.  At some point, however, X seems to really freak out
after a few days of use - I've had to restart X twice in the last week
on a desktop session that is supposed to remain up.

-- 
X.org will stop responding to mouse clicks on Ibex with Xinerama.  Occurs 
frequently, Fatal Error.
https://bugs.launchpad.net/bugs/296167
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