Gerhard,

I ran into the same problem as you. The "constructing molecules" shows
up when the system is trying to launch the "Molecule" screen saver. I
think it is some kind of bug related to the molecule screensaver.

I have already reported this bug (#72672)

Meanwhile here is a thread at Ubuntuforums that has info how to change
the screensaver to something other than Molecule.

http://ubuntuforums.org/showthread.php?t=303894

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https://launchpad.net/bugs/72942

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