But when messages are passed via sendmail (dual config) and amavis, the config file in /etc/mail/spamassassin/local.cf is not used.
What is wrong here ?
what signs of said failure are you seeing? Keep in mind that any spam-markup changes you apply to local.cf are irrelevant. amavis does it's own spam markups and does not use the markup generated by spamassassin. It only calls SA to generate a spamscore and a list of hits.
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