By the way, when I say "caught", I'm passing in the spam, heaer and all, that SpamAssassin caught. Maybe this is causing the problem.
That should be a non-issue. SA will automatically remove it's own markups when learning.
However, if you're doing something like forwarding messages, or changing other headers, bayes may learn things like "all messages that look like they were forwarded by pine are spam". That can cause problems.
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