Auto-learn and auto-whitelist use different scoring criteria from those used in spamassassin's spam filtering.
The bayes auto-learning does not use "it's own" scoring mechanism, it uses scoreset 0. This is the score the email would get by the main SA engine if bayes and network checks were off.
Certianly you do NOT want the bayes scores to feed back into bayes learning, If you can't see why, think "feedback amplifier with positive gain".
As for disabling the network checks for auto-learning, that makes sense to me as well, since the bayes code learns from text tokens, not IPs.
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