Dear Batsirai, I tried the line of code what you recommended but the code still generates an error unfortunately.
On Thu, Aug 24, 2017 at 5:19 PM, Batsirai Mabvakure <[email protected]> wrote: > > Try : > > > > sbatch -J jobname --mem=18000 -D $(pwd) submit_job.sh > > > > > > > > From: Sema Atasever <[email protected]<mailto:[email protected]>> > > Reply-To: slurm-dev <[email protected]<mailto:[email protected]>> > > Date: Thursday 24 August 2017 at 15:58 > > To: slurm-dev <[email protected]<mailto:[email protected]>> > > Subject: [slurm-dev] Re: Exceeded job memory limit problem > > > > Dear Lev, > > > > I already have tried --mem parameter with different values. > > > > For example: > > > > sbatch --mem=5GB submit_job. > > sbatch --mem=18000 submit_job. > > > > but every time it gave the same error again unfortunately. > > > > > > > > On Thu, Aug 24, 2017 at 2:32 AM, Lev Lafayette < > [email protected]<mailto:[email protected]>> wrote: > > On Wed, 2017-08-23 at 01:26 -0600, Sema Atasever wrote: > > > > > > > > > > > Computing predictions by SVM... > > > slurmstepd: Job 3469 exceeded memory limit (4235584 > 2048000), being > > > killed > > > slurmstepd: Exceeded job memory limit > > > > > > > > > How can i fix this problem. > > > > > > > Error messages often give useful information. In this case you haven't > > requested enough memory in your Slurm script. > > > > Memory can be set with `#SBATCH --mem=[mem][M|G|T]` directive (entire > > job) or `#SBATCH --mem-per-cpu=[mem][M|G|T]` (per core). > > > > As a rule of thumb, the maximum request per node should be based around > > total cores -1 (for system processes). > > > > All the best, > > > > > > -- > > Lev Lafayette, BA (Hons), GradCertTerAdEd (Murdoch), GradCertPM, MBA > > (Tech Mngmnt) (Chifley) > > HPC Support and Training Officer +61383444193<tel:%2B61383444193> > +61432255208<tel:%2B61432255208> > > Department of Infrastructure Services, University of Melbourne > > > > > > > > > > The views expressed in this email are, unless otherwise stated, those of > the author and not those of the National Health Laboratory Service or its > management. The information in this e-mail is confidential and is intended > solely for the addressee. > > Access to this e-mail by anyone else is unauthorized. If you are not the > intended recipient, any disclosure, copying, distribution or any action > taken or omitted in reliance on this, is prohibited and may be unlawful. > > Whilst all reasonable steps are taken to ensure the accuracy and integrity > of information and data transmitted electronically and to preserve the > confidentiality thereof, no liability or responsibility whatsoever is > accepted if information or data is, for whatever reason, corrupted or does > not reach its intended destination. >
