[OMPI users] issues installing openmpi-3.0.1

2018-04-02 Thread abhisek Mondal
Hi, I just have installed openmpi-3.0.1. Installation seemed to finish without any errors. However, I'm facing few issues while running a job. This is what is printed after configuration: *Open MPI configuration:* *---* *Version: 3.0.1* *Build MPI C bindings: yes* *Build MPI C

Re: [OMPI users] running mpi program between my PC and an ARM-architektur raspberry

2018-04-02 Thread Jeff Squyres (jsquyres)
On Mar 31, 2018, at 10:57 PM, peng jia wrote: > > I would like to run some MPI code with a cluster out of a normal laptop and a > ARM-architektur raspberrypi, but unsuccessfully the system would not > response, even though i install openmpi manuelly on both pc and raspberrypi. > > mypc@pc:~ $

Re: [OMPI users] issues installing openmpi-3.0.1

2018-04-02 Thread Jeff Squyres (jsquyres)
On Apr 2, 2018, at 10:03 AM, abhisek Mondal wrote: > > I just have installed openmpi-3.0.1. Installation seemed to finish without > any errors. However, I'm facing few issues while running a job. Can you be more specific? > This is what is printed after configuration: > Does the configuration

Re: [OMPI users] running mpi program between my PC and an ARM-architektur raspberry

2018-04-02 Thread dpchoudh .
Sorry for a pedantic follow up: Is this (heterogeneous cluster support) something that is specified by the MPI standard (perhaps as an optional component)? Do people know if MPICH. MVAPICH, Intel MPI etc support it? (I do realize this is an OpenMPI forum) The reason I ask is that I have a mini Li

[OMPI users] can not compile Openmpi-3.0

2018-04-02 Thread abhisek Mondal
Hi, I need some help regarding compiling Openmpi-3.0. I have perfectly working C compiler, however, during configuration I'm keep getting this error: ** *== Configuring Open MPI* *=

Re: [OMPI users] can not compile Openmpi-3.0

2018-04-02 Thread Gilles Gouaillardet
Can you please compress and attach your config.log ? You might also want to double check you can compile *and* run a simple C hello world program Cheers, Gilles On 4/3/2018 1:06 PM, abhisek Mondal wrote: Hi, I need some help regarding compiling Openmpi-3.0. I have perfectly working C

Re: [OMPI users] can not compile Openmpi-3.0

2018-04-02 Thread Douglas L Reeder
In the boldface line it refers to an openmpi-2.0.4 installation. It appears that the 3.0 build is trying to use libraires or includes from the 2.04 install instead of the 3.0 build. Can you carefully define your PATH and LD_LIBRARY_PATH (or whatever linux calls it) to prevent the 3.0 build from

Re: [OMPI users] can not compile Openmpi-3.0

2018-04-02 Thread abhisek Mondal
Hello, I have uploaded the config.log here: https://drive.google.com/drive/u/0/folders/0B6O-L5Y7BiGJfmQ4N2FpblBEcFNxaDZnaGpsUFFEUlotVWFjajR0UFFHNk5aYlhoSHVTWkU On Tue, Apr 3, 2018 at 9:47 AM, Gilles Gouaillardet wrote: > Can you please compress and attach your config.log ? > > > You might al

Re: [OMPI users] can not compile Openmpi-3.0

2018-04-02 Thread abhisek Mondal
Actually this error is happening for both versions. I tried to build openmpi-2.0 and openmpi-3.0. On Tue, Apr 3, 2018 at 9:48 AM, Douglas L Reeder wrote: > In the boldface line it refers to an openmpi-2.0.4 installation. It > appears that the 3.0 build is trying to use libraires or includes from

Re: [OMPI users] can not compile Openmpi-3.0

2018-04-02 Thread abhisek Mondal
To be accurate, the error is: [root@localhost build]# ../configure --prefix=/usr/local/openmpi-3.0 checking for perl... perl == Configuring Open MPI ===

Re: [OMPI users] can not compile Openmpi-3.0

2018-04-02 Thread Gilles Gouaillardet
This is the relevant part related to this error configure:6620: checking whether we are cross compiling configure:6628: gcc -o conftest    conftest.c  >&5 conftest.c:10:19: fatal error: stdio.h: No such file or directory  #include    ^ compilation terminated. configure:6632: $? =

Re: [OMPI users] can not compile Openmpi-3.0

2018-04-02 Thread abhisek Mondal
Hello, Installing glibc moved the installation little bit but again stuck at sanity check. Location of config.log: https://drive.google.com/drive/u/0/folders/0B6O-L5Y7BiGJfmQ4N2FpblBEcFNxaDZnaGpsUFFEUlotVWFjajR0UFFHNk5aYlhoSHVTWkU $ cpp --version cpp (GCC) 4.8.5 20150623 (Red Hat 4.8.5-16) Copyri

Re: [OMPI users] can not compile Openmpi-3.0

2018-04-02 Thread Gilles Gouaillardet
It looks like kernel-headers is required too Cheers, Gilles On 4/3/2018 2:28 PM, abhisek Mondal wrote: Hello, Installing glibc moved the installation little bit but again stuck at sanity check. Location of config.log: https://drive.google.com/drive/u/0/folders/0B6O-L5Y7BiGJfmQ4N2FpblBEcF

Re: [OMPI users] can not compile Openmpi-3.0

2018-04-02 Thread abhisek Mondal
Thanks a lot. Installing the headers worked like a charm ! I have a question though. Why does configuration says: Version: 3.0.1 Build MPI C bindings: yes Build MPI C++ bindings (deprecated): no Build MPI Fortran bindings: mpif.h, use mpi MPI Build Java bindings (experimental): no Build Open SHM