Re: [OMPI users] now 1.9 [was: I have still a problem with rankfiles in openmpi-1.6.4rc3]

2013-02-07 Thread Siegmar Gross
Hi > > thank you very much for your answer. I have compiled your program > > and get different behaviours for openmpi-1.6.4rc3 and openmpi-1.9. > > > > I get the following output for openmpi-1.9 (different outputs !!!). > > > > sunpc1 rankfiles 104 mpirun --report-bindings --rankfile myrankfile

Re: [OMPI users] I have still a problem with rankfiles in openmpi-1.6.4rc3

2013-02-07 Thread Siegmar Gross
Hi thank you very much for your patch. I have applied the patch to openmpi-1.6.4rc4. > > thank you very much for your answer. I have compiled your program > > and get different behaviours for openmpi-1.6.4rc3 and openmpi-1.9. > > Yes, something else seems to be going on for 1.9. > > For 1.6, tr

[OMPI users] error while loading shared libraries: libhdf5.so.7:

2013-02-07 Thread Syed Ahsan Ali
I have been running this program successfully before but some copy operation from /usr/ directory has caused this error. The program runs fine on the cores of the same machine. libhdf5.so.7 is also present. [pmdtest@pmd HadGEM]$ mpirun -np 32 -hostfile hostlist rca.x rca.x: error while loading sh

Re: [OMPI users] error while loading shared libraries: libhdf5.so.7:

2013-02-07 Thread John Hearns
ldd rca.x Try logging in to each node and run this command. Even better use pdsh

Re: [OMPI users] error while loading shared libraries: libhdf5.so.7:

2013-02-07 Thread Syed Ahsan Ali
Dear John Thanks for the reply. I'll need help of you people to solve this problem. I am not expert in HPC and this would be my learning as well. Let me add that the cluster is based on Platform Cluster Manager (PCM) by IBM Computing. The compute nodes are NFS mounted with the installer node. There

Re: [OMPI users] I have still a problem with rankfiles in openmpi-1.6.4rc3

2013-02-07 Thread Eugene Loh
On 02/07/13 01:05, Siegmar Gross wrote: thank you very much for your patch. I have applied the patch to openmpi-1.6.4rc4. Open MPI: 1.6.4rc4r28022 : [B .][. .] (slot list 0:0) : [. B][. .] (slot list 0:1) : [B B][. .] (slot list 0:0-1) : [. .][B .] (slot list 1:0) : [. .][. B] (slot list 1:1) :

Re: [OMPI users] error while loading shared libraries: libhdf5.so.7:

2013-02-07 Thread Syed Ahsan Ali
Dear John Looking into output of ldd for master and compute nodes solved my problem. Thanks for such a simple solution. :) On Thu, Feb 7, 2013 at 9:37 PM, Syed Ahsan Ali wrote: > Dear John > Thanks for the reply. I'll need help of you people to solve this problem. > I am not expert in HPC and thi

Re: [OMPI users] error while loading shared libraries: libhdf5.so.7:

2013-02-07 Thread Gus Correa
On 02/07/2013 05:55 AM, Syed Ahsan Ali wrote: I have been running this program successfully before but some copy operation from /usr/ directory has caused this error. The program runs fine on the cores of the same machine. libhdf5.so.7 is also present. [pmdtest@pmd HadGEM]$ mpirun -np 32 -hostfil

Re: [OMPI users] OpenMPI 1.6 with Intel 11 Compiler

2013-02-07 Thread Jiri Polach
Dear Ralph and Matthias, thank you for your notes. As I do not need VampirTrace, I went with '--disable-vt' and everything was fine. Best ergards, Jiri On 2/5/2013 11:04 AM, Matthias Jurenz wrote: Did you verified that your icpc works properly? Can you compile other C++ applications with ic