Dear John Looking into output of ldd for master and compute nodes solved my problem. Thanks for such a simple solution. :)
On Thu, Feb 7, 2013 at 9:37 PM, Syed Ahsan Ali <ahsansha...@gmail.com>wrote: > Dear John > Thanks for the reply. I'll need help of you people to solve this problem. > I am not expert in HPC and this would be my learning as well. Let me add > that the cluster is based on Platform Cluster Manager (PCM) by IBM > Computing. The compute nodes are NFS mounted with the installer node. > Therefore the directory containing binary rca.x is also present in the > compute nodes. Unfortunately I was trying to copy gfortran libraries from > installer node to compute nodes using rsync but something went wrong and > the model binary rca.x stopped working. I have recompiled the binary after > reinstalling hdf as well as netcdf which model uses during compilation. All > path are set in bashrc as well. > Below is the output of ldd on master as well as compute nodes > > > > [pmdtest@pmd HadGEM]$ ldd rca.x > > libstdc++.so.6 => /usr/local/lib64/libstdc++.so.6 (0x00002b6a9503c000) > > libnetcdff.so.5 => /usr/local/lib/libnetcdff.so.5 (0x00002b6a95344000) > > libnetcdf.so.7 => /usr/local/lib/libnetcdf.so.7 (0x00002b6a95798000) > > libhdf5.so.7 => /usr/local/lib/libhdf5.so.7 (0x00002b6a95aa1000) > > libhdf5_hl.so.7 => /usr/local/lib/libhdf5_hl.so.7 (0x00002b6a95f5c000) > > libsz.so.2 => /usr/local/lib/libsz.so.2 (0x00002b6a9618b000) > > libz.so.1 => /usr/local/lib/libz.so.1 (0x00002b6a9639f000) > > libmpi_f90.so.0 => /home/openmpi/lib/libmpi_f90.so.0 (0x00002b6a965b4000) > > libmpi_f77.so.0 => /home/openmpi/lib/libmpi_f77.so.0 (0x00002b6a967b7000) > > libmpi.so.0 => /home/openmpi/lib/libmpi.so.0 (0x00002b6a969ee000) > > libopen-rte.so.0 => /home/openmpi/lib/libopen-rte.so.0 (0x00002b6a96cb6000) > > libopen-pal.so.0 => /home/openmpi/lib/libopen-pal.so.0 (0x00002b6a96f16000) > > libdl.so.2 => /lib64/libdl.so.2 (0x00000033e0e00000) > > libnsl.so.1 => /lib64/libnsl.so.1 (0x00000033e2200000) > > libutil.so.1 => /lib64/libutil.so.1 (0x00000033ee400000) > > libm.so.6 => /lib64/libm.so.6 (0x00000033e1200000) > > libpthread.so.0 => /lib64/libpthread.so.0 (0x00000033e1600000) > > libc.so.6 => /lib64/libc.so.6 (0x00000033e0a00000) > > libgcc_s.so.1 => /usr/local/lib64/libgcc_s.so.1 (0x00002b6a971a0000) > > /lib64/ld-linux-x86-64.so.2 (0x00000033e0600000) > > librt.so.1 => /lib64/librt.so.1 (0x000000362ac00000) > > libifport.so.5 => /opt/intel/Compiler/11.1/064/lib/intel64/libifport.so.5 > (0x00002b6a973b5000) > > libifcore.so.5 => /opt/intel/Compiler/11.1/064/lib/intel64/libifcore.so.5 > (0x00002b6a974ef000) > > libimf.so => > /opt/intel/composer_xe_2013.0.079/compiler/lib/intel64/libimf.so > (0x00002b6a97765000) > > libsvml.so => > /opt/intel/composer_xe_2013.0.079/compiler/lib/intel64/libsvml.so > (0x00002b6a97c2f000) > > libintlc.so.5 => > /opt/intel/composer_xe_2013.0.079/compiler/lib/intel64/libintlc.so.5 > (0x00002b6a984f5000) > > libifcoremt.so.5 => > /opt/intel/Compiler/11.1/064/lib/intel64/libifcoremt.so.5 > (0x00002b6a98743000) > > libirng.so => > /opt/intel/composer_xe_2013.0.079/compiler/lib/intel64/libirng.so > (0x00002b6a989e8000) > > [pmdtest@pmd HadGEM]$ ssh compute-01-18 > > ssh: connect to host compute-01-18 port 22: No route to host > > [pmdtest@pmd HadGEM]$ ssh compute-01-13 > > Last login: Mon Jan 28 07:48:08 2013 from pmd-eth0.private.dns.zone > > [pmdtest@compute-01-13 ~]$ ldd rca.x > > ldd: ./rca.x: No such file or directory > > [pmdtest@compute-01-13 ~]$ ls > /home/pmdtest/RCA4_CORDEX/RCA4_CORDEX_SAsia/HadGEM/rca.x > Regards > Ahsan > > > On Thu, Feb 7, 2013 at 7:40 PM, John Hearns <hear...@googlemail.com>wrote: > >> ldd rca.x >> >> Try logging in to each node and run this command. >> Even better use pdsh >> >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users >> > > > > -- Syed Ahsan Ali Bokhari Electronic Engineer (EE) Research & Development Division Pakistan Meteorological Department H-8/4, Islamabad. Phone # off +92518358714 Cell # +923155145014
