[OMPI users] Cofigure(?) problem building /1.5.3 on ScientificLinux6.0

2011-07-22 Thread Paul Kapinos
Dear OpenMPI volks, currently I have a problem by building the version 1.5.3 of OpenMPI on Scientific Linux 6.0 systems, which seem vor me to be a configuration problem. After the configure run (which seem to terminate without error code), the "gmake all" stage produces errors and exits. Typical

[OMPI users] stuck after IMB calling MPI_Finalize in Open MPI trunk

2011-07-22 Thread tma
HI: I tried to run IMB's Bcast test with 144 processes on 6 nodes(24cores/node) with Open MPI trunk like: mpirun --hostfile ~/host --bynode -np 144 ./IMB-MPI1 Bcast -npmin 144 Most time, it's stuck there after IMB's calling MPI_finalize. When I quit by ctrl+c, it throws the complain li

[OMPI users] Usage of PGI compilers (Libtool or OpenMPI issue?)

2011-07-22 Thread Paul Kapinos
Hi, just found out: the --instantiation_dir, --one_instantiation_per_object, and --template_info_file flags are deprecated in the newer versions of the PGI compilers, cf. http://www.pgroup.com/support/release_tprs_2010.htm But, compiling OpenMPI /1.4.3 with 11.7 PGI compilers, I see the warni

[OMPI users] One more pgi+libtool issue

2011-07-22 Thread Paul Kapinos
Hi, One more libtool/openMPI issue. Installing OpenMPI in version 1.4.3 using the 11.7 PGI compilers in 32 bit, I get a compilation error: -- ../../../ompi/.libs/libmpi.so: could not read symbols: File in wrong format

[OMPI users] and the next one (3th today!) PGI+OpenMPI issue

2011-07-22 Thread Paul Kapinos
... just do almost the same thing: Try to install OpenMPI 1.4.3 using 11.7 PGI Compiler on Scientific Linux 6.0. The same place, but other error message: -- /usr/lib64/crt1.o: In function `_start': (.text+0x20): undefine

Re: [OMPI users] Cofigure(?) problem building /1.5.3 on ScientificLinux6.0

2011-07-22 Thread Ralph Castain
Higher rev levels of the autotools are required for the 1.5 series - are you at the right ones? See http://www.open-mpi.org/svn/building.php On Jul 22, 2011, at 9:12 AM, Paul Kapinos wrote: > Dear OpenMPI volks, > currently I have a problem by building the version 1.5.3 of OpenMPI on > Scienti

Re: [OMPI users] Cofigure(?) problem building /1.5.3 on ScientificLinux6.0

2011-07-22 Thread Paul Kapinos
Hi Ralph, Higher rev levels of the autotools are required for the 1.5 series - are you at the right ones? See http://www.open-mpi.org/svn/building.php Many thanks for the link. Short test, and it's out: autoconf version on our release is too old. We have 2.63 and needed ist 2.65. I will tri

Re: [OMPI users] Cofigure(?) problem building /1.5.3 on ScientificLinux6.0

2011-07-22 Thread Jeff Squyres
Your RUNME script is a *very* strange way to build Open MPI. It starts with a massive copy: cp -r /home/pk224850/OpenMPI/openmpi-1.5.3/AUTHORS /home/pk224850/OpenMPI/openmpi-1.5.3/CMakeLists.txt <...much snipped...> . Why are you doing this kind of copy? I suspect that the GNU autotools' tim

Re: [OMPI users] Cofigure(?) problem building /1.5.3 on ScientificLinux6.0

2011-07-22 Thread Jeff Squyres
Ah -- Ralph pointed out the relevant line to me in your first mail that I initially missed: > In each case I build 16 versions at all (4 compiler * 32bit/64bit * > support for multithreading ON/OFF). The same error arise in all 16 versions. Perhaps you should just expand the tarball once and the

Re: [OMPI users] Cofigure(?) problem building /1.5.3 on ScientificLinux6.0

2011-07-22 Thread Gus Correa
Hi Would "cp -rp" help? (To preserve time stamps, instead of "cp -r".) Anyway, since 1.2.8 here I build 5, sometimes more versions, all from the same tarball, but on separate build directories, as Jeff suggests. [VPATH] Works for me. My two cents. Gus Correa Jeff Squyres wrote: Ah -- Ralph po

Re: [OMPI users] and the next one (3th today!) PGI+OpenMPI issue

2011-07-22 Thread Jeff Squyres
Could you try compiling a trunk nightly tarball of Open MPI? We recently upgraded the version of Libtool that is used to bootstrap that tarball (compared to the v1.4 and v1.5 tarballs): http://www.open-mpi.org/nightly/trunk/ On Jul 22, 2011, at 12:13 PM, Paul Kapinos wrote: > ... just do a

[OMPI users] Problems with MPI_Iprobe

2011-07-22 Thread Rodrigo Oliveira
Hi there. I have an application in which I need to terminate a process anytime due an external command. In order to maintain the consistence of the processes, I need to receive the messages that were already sent to the terminating process. I used the MPI_Iprobe to check whether there is messages