Hi
We have solved the problem by rewriting the starter.sh...
The script remained the same except for the very final part where
command is executed... Instead of plain exec "$@", we replaced it by:
==
#need for exec to fail on non-script jobs
shopt -s execfail
#start the job in thus shell
Am 01.12.2009 um 10:32 schrieb Ondrej Glembek:
Just to add more info:
Reuti wrote:
Am 30.11.2009 um 20:07 schrieb Ondrej Glembek:
But I think the real problem is, that Open MPI assumes you are
outside
of SGE and so uses a different startup. Are you resetting any of
SGE's
environment vari
Hi,
Am 01.12.2009 um 10:00 schrieb Ondrej Glembek:
Reuti wrote:
./configure --prefix=/homes/kazi/glembek/share/openmpi-1.3.3-64
--with-sge --enable-shared --enable-static --host=x86_64-linux
--build=x86_64-linux NM=x86_64-linux-nm
Is there any list of valid values for --host, --build and NM
Just to add more info:
Reuti wrote:
> Am 30.11.2009 um 20:07 schrieb Ondrej Glembek:
>
> But I think the real problem is, that Open MPI assumes you are outside
> of SGE and so uses a different startup. Are you resetting any of SGE's
> environment variables in your custom starter method (like $JOB
Hi
Reuti wrote:
>>
>> ./configure --prefix=/homes/kazi/glembek/share/openmpi-1.3.3-64
>> --with-sge --enable-shared --enable-static --host=x86_64-linux
>> --build=x86_64-linux NM=x86_64-linux-nm
>
> Is there any list of valid values for --host, --build and NM - and what
> is NM for? From the ./co
Am 30.11.2009 um 20:07 schrieb Ondrej Glembek:
I definitely compiled the package with --with-sge flag... Here's my
configure log:
./configure --prefix=/homes/kazi/glembek/share/openmpi-1.3.3-64 --
with-sge --enable-shared --enable-static --host=x86_64-linux --
build=x86_64-linux NM=x86_64-l
I definitely compiled the package with --with-sge flag... Here's my
configure log:
./configure --prefix=/homes/kazi/glembek/share/openmpi-1.3.3-64
--with-sge --enable-shared --enable-static --host=x86_64-linux
--build=x86_64-linux NM=x86_64-linux-nm
Just to mention one more interesting thing
Am 30.11.2009 um 18:46 schrieb Ondrej Glembek:
Hi, thanx for reply...
I tried to dump the $@ before calling the exec and here it is:
( test ! -r ./.profile || . ./.profile; PATH=/homes/kazi/glembek/
share/openmpi-1.3.3-64/bin:$PATH ; export PATH ; LD_LIBRARY_PATH=/
homes/kazi/glembek/share/
Hi, thanx for reply...
I tried to dump the $@ before calling the exec and here it is:
( test ! -r ./.profile || . ./.profile;
PATH=/homes/kazi/glembek/share/openmpi-1.3.3-64/bin:$PATH ; export PATH
;
LD_LIBRARY_PATH=/homes/kazi/glembek/share/openmpi-1.3.3-64/lib:$LD_LIBRARY_PATH
; export LD
Hi,
Am 30.11.2009 um 16:33 schrieb Ondrej Glembek:
we are using a custom starter method in our SGE to launch our
jobs... It
looks something like this:
#!/bin/sh
# ... we do whole bunch of stuff here
#start the job in thus shell
exec "$@"
the "$@" should be replaced by the path to the job
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