Hi, thanx for reply...
I tried to dump the $@ before calling the exec and here it is:
( test ! -r ./.profile || . ./.profile;
PATH=/homes/kazi/glembek/share/openmpi-1.3.3-64/bin:$PATH ; export PATH
;
LD_LIBRARY_PATH=/homes/kazi/glembek/share/openmpi-1.3.3-64/lib:$LD_LIBRARY_PATH
; export LD_LIBRARY_PATH ;
/homes/kazi/glembek/share/openmpi-1.3.3-64/bin/orted -mca ess env -mca
orte_ess_jobid 3870359552 -mca orte_ess_vpid 1 -mca orte_ess_num_procs 2
--hnp-uri "3870359552.0;tcp://147.229.8.134:53727" --mca
pls_gridengine_verbose 1 --output-filename mpi.log )
It looks like the line gets constructed in
orte/mca/plm/rsh/plm_rsh_module.c and depends on the shell...
Still I wonder, why mpiexec calls the starter.sh... I thought the
starter was supposed to call the script which wraps a call to mpiexec...
Am I not right???
Ondrej
Reuti wrote:
Hi,
Am 30.11.2009 um 16:33 schrieb Ondrej Glembek:
we are using a custom starter method in our SGE to launch our jobs... It
looks something like this:
#!/bin/sh
# ... we do whole bunch of stuff here
#start the job in thus shell
exec "$@"
the "$@" should be replaced by the path to the jobscript (qsub) or
command (qrsh) plus the given options.
For the spread tasks to other nodes I get as argument: " orted -mca ess
env -mca orte_ess_jobid ...". Also no . ./.profile.
So I wonder, where the . ./.profile is coming from. Can you put a `sleep
60` or alike before the `exec ...` and grep the built line from `ps -e
f` before it crashes?
-- Reuti
The trouble is that mpiexec passes a command which looks like this:
( . ./.profile ..... )
which, however, is not a valid exec argument...
Is there any way to tell mpiexec to run it in a separate script??? Any
idea how to solve this???
Thanx
Ondrej Glembek
--
Ondrej Glembek, PhD student E-mail: glem...@fit.vutbr.cz
UPGM FIT VUT Brno, L226 Web: http://www.fit.vutbr.cz/~glembek
Bozetechova 2, 612 66 Phone: +420 54114-1292
Brno, Czech Republic Fax: +420 54114-1290
ICQ: 93233896
GPG: C050 A6DC 7291 6776 9B69 BB11 C033 D756 6F33 DE3C
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--
Ondrej Glembek, PhD student E-mail: glem...@fit.vutbr.cz
UPGM FIT VUT Brno, L226 Web: http://www.fit.vutbr.cz/~glembek
Bozetechova 2, 612 66 Phone: +420 54114-1292
Brno, Czech Republic Fax: +420 54114-1290
ICQ: 93233896
GPG: C050 A6DC 7291 6776 9B69 BB11 C033 D756 6F33 DE3C
