thanksI got :-bash-3.2$ padb -Ormgr=pbs -Q 48516.cystorm2$VAR1 = {};Job
48516.cluster is not activeActually, the job is running. Any help is
appreciated. thanksJinxu DingOct. 27 2010
> Subject: Re: [OMPI users] Open MPI program cannot complete
> From: ash...@pittman.co.uk
> Date: Tu
thanks
I got :
-bash-3.2$ padb -Ormgr=pbs -Q 48516.cystorm2$VAR1 = {};Job 48516.cluster is
not active
Actually, the job is running.
Any help is appreciated.
thanksJinxu Ding
Oct. 26 2010
> Subject: Re: [OMPI users] Open MPI program cannot complete
> From: ash...@pittman.co.uk
> Date
Subject: Re: [OMPI users] Open MPI program cannot complete
From: ash...@pittman.co.uk
List-Post: users@lists.open-mpi.org
Date: Tue, 26 Oct 2010 08:39:56 +0100
CC: tomview...@yahoo.com
To: dtustud...@hotmail.com
Sorry, I forgot to attach it last night.
thanksBut, I cannot see the attachment in the email. Would you please send me
again ? and also copy to another my email:tomviewisu@yahoo.comthanksOct. 25 2010
From: dtustud...@hotmail.com
To: ash...@pittman.co.uk
Subject: RE: [OMPI users] Open MPI program cannot complete
List-Post: users
nstallcheck'.make[1]: Leaving directory
`/mypath/padb32/padb-3.2-beta1/src'make[1]: Entering directory
`/mypath/padb32/padb-3.2-beta1'make[1]: Nothing to be done for
`installcheck-am'.make[1]: Leaving directory
`/mypath/padb32/padb-3.2-beta1'----------------
can you install MPI on your local machine? As someone said earlier, you
don't need a cluster to run MPI. You can run MPI with multiple processes on
a single computer.
On Mon, Oct 25, 2010 at 12:40 PM, Ashley Pittman wrote:
>
> On 25 Oct 2010, at 20:18, Jack Bryan wrote:
>
> > Thanks
> > I have d
On 25 Oct 2010, at 20:18, Jack Bryan wrote:
> Thanks
> I have downloaded
> http://padb.googlecode.com/files/padb-3.0.tgz
>
> and compile it.
>
> But, no user manual, I can not use it by padb -aQ.
The -a flag is a shortcut to all jobs, if you are providing a jobid (which is
normally numeric)
?
thanks
> From: ash...@pittman.co.uk
> Date: Mon, 25 Oct 2010 18:08:32 +0100
> To: us...@open-mpi.org
> Subject: Re: [OMPI users] Open MPI program cannot complete
>
>
> On 25 Oct 2010, at 17:26, Jack Bryan wrote:
>
> > Thanks, the problem is still there.
> >
thanks
But, the code is too long.
Jack Oct. 25 2010
> Date: Mon, 25 Oct 2010 14:08:54 -0400
> From: g...@ldeo.columbia.edu
> To: us...@open-mpi.org
> Subject: Re: [OMPI users] Open MPI program cannot complete
>
> Your job may be queued, not executing, because there are no
>
.
Any help is appreciated.
Thanks
Jack
Oct. 25 2010
From: jsquy...@cisco.com
Date: Mon, 25 Oct 2010 13:39:30 -0400
To: us...@open-mpi.org
Subject: Re: [OMPI users] Open MPI program cannot complete
Can you use the interactive mode of PBS to get 5 cores on 1 node? IIRC, "qs
show up.
>
> No shell prompt appear, the command line is hang there , no response.
>
> Any help is appreciated.
>
> Thanks
>
> Jack
>
> Oct. 25 2010
>
> > From: jsquy...@cisco.com
> > Date: Mon, 25 Oct 2010 13:39:30 -0400
> > To: us...@
rom: jsquy...@cisco.com
> Date: Mon, 25 Oct 2010 13:39:30 -0400
> To: us...@open-mpi.org
> Subject: Re: [OMPI users] Open MPI program cannot complete
>
> Can you use the interactive mode of PBS to get 5 cores on 1 node? IIRC,
> "qsub -I ..." ?
>
> Then you get a s
On Mon, Oct 25, 2010 at 19:35, Jack Bryan wrote:
> I have to use #PBS to submit any jobs in my cluster.
> I cannot use command line to hang a job on my cluster.
>
You don't need a cluster to run MPI jobs, can you run the job on whatever
you development machine is? Does it hang there?
PBS inter
;
> thanks
>
> Oct. 25 2010
>
> Date: Mon, 25 Oct 2010 19:24:35 +0200
> From: j...@59a2.org
> To: us...@open-mpi.org
> Subject: Re: [OMPI users] Open MPI program cannot complete
>
> On Mon, Oct 25, 2010 at 19:07, Jack Bryan wrote:
> I need to use #PBS parallel job scri
ZOMBIE_PID from the script ?
Any help is appreciated.
thanks
Oct. 25 2010
List-Post: users@lists.open-mpi.org
Date: Mon, 25 Oct 2010 19:24:35 +0200
From: j...@59a2.org
To: us...@open-mpi.org
Subject: Re: [OMPI users] Open MPI program cannot complete
On Mon, Oct 25, 2010 at 19:07, Jack Bryan wrote:
On Mon, Oct 25, 2010 at 19:07, Jack Bryan wrote:
> I need to use #PBS parallel job script to submit a job on MPI cluster.
>
Is it not possible to reproduce locally? Most clusters have a way to submit
an interactive job (which would let you start this thing and then inspect
individual processes)
On 25 Oct 2010, at 17:26, Jack Bryan wrote:
> Thanks, the problem is still there.
>
> I used:
>
> Only process 0 returns. Other processes are still struck in
> MPI_Finalize().
>
> Any help is appreciated.
You can use the command "padb -aQ" to show you the message queues for your
appl
ZOMBIE_PID) in the script ?
How to get the ZOMBIE_PID ?
thanks
Any help is appreciated.
Jack
Oct. 25 2010
List-Post: users@lists.open-mpi.org
Date: Mon, 25 Oct 2010 19:01:38 +0200
From: j...@59a2.org
To: us...@open-mpi.org
Subject: Re: [OMPI users] Open MPI program cannot complete
On Mon,
On Mon, Oct 25, 2010 at 18:26, Jack Bryan wrote:
> Thanks, the problem is still there.
This really doesn't prove that there are no outstanding asynchronous
requests, but perhaps you know that there are not, despite not being able to
post a complete test case here. I suggest attaching a debugge
n\n" << endl ;return 0 ;
Only process 0 returns. Other processes are still struck inMPI_Finalize().
Any help is appreciated.
JACK
Oct. 25 2010
From: solarbik...@gmail.com
List-Post: users@lists.open-mpi.org
Date: Mon, 25 Oct 2010 08:27:19 -0700
To: us...@open-mpi.
shed. right ?
>
> What may be the possible reasons for that stuck ?
>
> Any help is appreciated.
>
> Jack
>
> Oct. 25 2010
> *
> *
> --
> Date: Mon, 25 Oct 2010 05:32:44 -0400
> From: terry.don...@oracle.com
>
> To: us...@open-mpi.
t may be the possible reasons for that stuck ?
Any help is appreciated.
Jack
Oct. 25 2010
List-Post: users@lists.open-mpi.org
Date: Mon, 25 Oct 2010 05:32:44 -0400
From: terry.don...@oracle.com
To: us...@open-mpi.org
Subject: Re: [OMPI users] Open MPI program cannot complete
Mess
ct. 25 2010
------------
From: solarbik...@gmail.com
Date: Sun, 24 Oct 2010 19:47:54 -0700
To: us...@open-mpi.org
Subject: Re: [OMPI users] Open MPI program cannot complete
how do you know all process call mpi_finalize? did you have all
process has reached the point just before MPI_Finalize(), why
they are hanged there ?
Are there other better ways to check this ? Any help is appreciated.
thanksJackOct. 25 2010
From: solarbik...@gmail.com
List-Post: users@lists.open-mpi.org
Date: Sun, 24 Oct 2010 19:47:54 -0700
To: us...@open-mpi.o
r better ways to check this ?
Any help is appreciated.
thanks
Jack
Oct. 25 2010
From: solarbik...@gmail.com
List-Post: users@lists.open-mpi.org
Date: Sun, 24 Oct 2010 19:47:54 -0700
To: us...@open-mpi.org
Subject: Re: [OMPI users] Open MPI program cannot complete
how do you know all process c
> > Date: Sun, 24 Oct 2010 18:09:52 -0400
>
> > To: us...@open-mpi.org
> > Subject: Re: [OMPI users] Open MPI program cannot complete
> >
> > Hi Jack
> >
> > Your code snippet is too terse, doesn't show the MPI calls.
> > It is hard to guess
Thanks,
But, my code is too long to be posted.
What are the common reasons of this kind of problems ?
Any help is appreciated.
Jack
Oct. 24 2010
> From: g...@ldeo.columbia.edu
> Date: Sun, 24 Oct 2010 18:09:52 -0400
> To: us...@open-mpi.org
> Subject: Re: [OMPI users] Open MPI pr
t; done before a process call MPI_Finalize() and returns.
>
> Any help is appreciated.
>
> thanks
>
> Jack
>
> Oct. 24 2010
>
> > From: g...@ldeo.columbia.edu
> > Date: Sun, 24 Oct 2010 17:31:11 -0400
> > To: us...@open-mpi.org
> > Subject: R
s...@open-mpi.org
> Subject: Re: [OMPI users] Open MPI program cannot complete
>
> Hi Jack
>
> It may depend on "do some things".
> Does it involve MPI communication?
>
> Also, why not put MPI_Finalize();return 0 outside the ifs?
>
> Gus Correa
>
> O
Hi Jack
It may depend on "do some things".
Does it involve MPI communication?
Also, why not put MPI_Finalize();return 0 outside the ifs?
Gus Correa
On Oct 24, 2010, at 2:23 PM, Jack Bryan wrote:
> Hi
>
> I got a problem of open MPI.
>
> My program has 5 processes.
>
> All of them can run
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