Check the man page for qsub for proper use.
On Oct 25, 2010, at 1:49 PM, Jack Bryan wrote: > thanks > > I use > qsub -I nsga2_job.sh > qsub: waiting for job 48270.clusterName to start > > By qstat > I found the job name is none and no results show up. > > No shell prompt appear, the command line is hang there , no response. > > Any help is appreciated. > > Thanks > > Jack > > Oct. 25 2010 > > > From: jsquy...@cisco.com > > Date: Mon, 25 Oct 2010 13:39:30 -0400 > > To: us...@open-mpi.org > > Subject: Re: [OMPI users] Open MPI program cannot complete > > > > Can you use the interactive mode of PBS to get 5 cores on 1 node? IIRC, > > "qsub -I ..." ? > > > > Then you get a shell prompt with your allocated cores and can run stuff > > interactively. I don't know if your site allows this, but interactive > > debugging here might be *significantly* easier than try to automate some > > debugging. > > > > > > On Oct 25, 2010, at 1:35 PM, Jack Bryan wrote: > > > > > thanks > > > > > > I have to use #PBS to submit any jobs in my cluster. > > > I cannot use command line to hang a job on my cluster. > > > > > > this is my script: > > > -------------------------------------- > > > #!/bin/bash > > > #PBS -N jobname > > > #PBS -l walltime=00:08:00,nodes=1 > > > #PBS -q queuename > > > COMMAND=/mypath/myprog > > > NCORES=5 > > > > > > cd $PBS_O_WORKDIR > > > NODES=`cat $PBS_NODEFILE | wc -l` > > > NPROC=$(( $NCORES * $NODES )) > > > > > > mpirun -np $NPROC --mca btl self,sm,openib $COMMAND > > > > > > ------------------------------------------- > > > > > > Where should I put the (gdb --batch -ex 'bt full' -ex 'info reg' -pid > > > ZOMBIE_PID) in the script ? > > > And how to get ZOMBIE_PID from the script ? > > > > > > Any help is appreciated. > > > > > > thanks > > > > > > Oct. 25 2010 > > > > > > Date: Mon, 25 Oct 2010 19:24:35 +0200 > > > From: j...@59a2.org > > > To: us...@open-mpi.org > > > Subject: Re: [OMPI users] Open MPI program cannot complete > > > > > > On Mon, Oct 25, 2010 at 19:07, Jack Bryan <dtustud...@hotmail.com> wrote: > > > I need to use #PBS parallel job script to submit a job on MPI cluster. > > > > > > Is it not possible to reproduce locally? Most clusters have a way to > > > submit an interactive job (which would let you start this thing and then > > > inspect individual processes). Ashley's Padb suggestion will certainly be > > > better in a non-interactive environment. > > > > > > Where should I put the (gdb --batch -ex 'bt full' -ex 'info reg' -pid > > > ZOMBIE_PID) in the script ? > > > > > > Is control returning to your script after rank 0 has exited? In that > > > case, you can just put this on the next line. > > > > > > How to get the ZOMBIE_PID ? > > > > > > "ps" from the command line, or getpid() from C code. > > > > > > Jed > > > > > > _______________________________________________ users mailing list > > > us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/users > > > _______________________________________________ > > > users mailing list > > > us...@open-mpi.org > > > http://www.open-mpi.org/mailman/listinfo.cgi/users > > > > > > -- > > Jeff Squyres > > jsquy...@cisco.com > > For corporate legal information go to: > > http://www.cisco.com/web/about/doing_business/legal/cri/ > > > > > > _______________________________________________ > > users mailing list > > us...@open-mpi.org > > http://www.open-mpi.org/mailman/listinfo.cgi/users > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users -- Jeff Squyres jsquy...@cisco.com For corporate legal information go to: http://www.cisco.com/web/about/doing_business/legal/cri/
