Re: [OMPI users] Error when attempting to run LAMMPS on Centos 6.2
with OpenMPI
On Jan 26, 2013, at 11:18 PM, #YEO JINGJIE# wrote:
> So I should run the job as:
>
> /usr/lib64/openmpi/bin/mpirun -mca mca_component_show_load_errors 1 -n 16
> /opt/lammps-21Jan13/lmp_linux < zigz
___
> From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] on behalf of
> Ralph Castain [r...@open-mpi.org]
> Sent: Sunday, 27 January, 2013 11:58:51 AM
> To: Open MPI Users
> Subject: Re: [OMPI users] Error when attempting to run LAMMPS on Cento
ore
From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] on behalf of
Ralph Castain [r...@open-mpi.org]
Sent: Sunday, 27 January, 2013 11:58:51 AM
To: Open MPI Users
Subject: Re: [OMPI users] Error when attempting to run LAMMPS on Centos 6.2
with Open
Student
> School of Mechanical and Aerospace Engineering
> Nanyang Technological University, Singapore
>
>
> From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] on behalf of
> Jeff Squyres (jsquyres) [jsquy...@cisco.com]
> Sent
_
From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] on behalf of Jeff
Squyres (jsquyres) [jsquy...@cisco.com]
Sent: Saturday, 26 January, 2013 9:51:43 PM
To: Open MPI Users
Subject: Re: [OMPI users] Error when attempting to run LAMMPS on Centos 6.2
with OpenMPI
Can you provide mor
Can you provide more information? You really haven't said *what* the problem
is that is occurring (even in your followup emails to Ralph). Without such
information, it is very hard for us to guess what is wrong.
Please send all the information listed here:
http://www.open-mpi.org/communit
txt
>> help-orted.txt
>> /usr/lib64/openmpi/share/openmpi/amca-param-sets:
>> btl-openib-benchmark example.conf
>> /usr/lib64/openmpi/share/openmpi/doc:
>> COPYRIGHT-ptmalloc2.txt
>> /usr/lib64/openmpi/share/vampirtrace:
>> doc METRICS.SPEC
]
Sent: Saturday, 26 January, 2013 10:29:13 AM
To: Open MPI Users
Subject: Re: [OMPI users] Error when attempting to run LAMMPS on Centos 6.2
with OpenMPI
Okay - that's why I don't like package installs...
Still, it should work. One thing I don't like is that you have
/usr/lib64
MCA plm: slurm (MCA v2.0, API v2.0, Component v1.5.4)
>>MCA filem: rsh (MCA v2.0, API v2.0, Component v1.5.4)
>> MCA errmgr: default (MCA v2.0, API v2.0, Component v1.5.4)
>> MCA ess: env (MCA v2.0, API v2.0, Component v1.5.4)
>&
Castain [r...@open-mpi.org]
Sent: Saturday, 26 January, 2013 10:17:25 AM
To: Open MPI Users
Subject: Re: [OMPI users] Error when attempting to run LAMMPS on Centos 6.2
with OpenMPI
Hmmm...looks like it was built with Slurm support - is your cluster running
Slurm? Do you see an "srun" com
MCA grpcomm: basic (MCA v2.0, API v2.0, Component v1.5.4)
> MCA grpcomm: hier (MCA v2.0, API v2.0, Component v1.5.4)
> MCA notifier: command (MCA v2.0, API v1.0, Component v1.5.4)
> MCA notifier: smtp (MCA v2.0, API v1.0, Component v1.5.4)
>
ersity, Singapore
From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] on behalf of
Ralph Castain [r...@open-mpi.org]
Sent: Saturday, 26 January, 2013 9:58:04 AM
To: Open MPI Users
Subject: Re: [OMPI users] Error when attempting to run LAMMPS on Centos 6.2
with O
Groan - I hate these bundled installs :-(
If you do "ompi_info", what does it tell you? Could you please send it along?
Thanks
On Jan 25, 2013, at 5:51 PM, #YEO JINGJIE# wrote:
> I tried to follow the installation instructions over here:
>
> http://amusecode.org/doc/install/install-prerequis
I tried to follow the installation instructions over here:
http://amusecode.org/doc/install/install-prerequisites-redhat.html
And I am using bash and yum.
Regards,
Jingjie Yeo
Ph.D. Student
School of Mechanical and Aerospace Engineering
Nanyang Technological University, Singapore
How was OMPI configured? What type of system are you running on (i.e., what is
the launcher - ssh, lsf, slurm, ...)?
On Jan 24, 2013, at 6:35 PM, #YEO JINGJIE# wrote:
> Dear users,
>
> Maybe something went wrong as I was compiling OpenMPI, I am very new to
> linux. When I try to run LAMMPS
Dear users,
Maybe something went wrong as I was compiling OpenMPI, I am very new to linux.
When I try to run LAMMPS using the following command:
/usr/lib64/openmpi/bin/mpirun -n 16 /opt/lammps-21Jan13/lmp_linux < zigzag.in
I get the following errors:
[NTU-2:28895] [[INVALID],INVALID] O
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