So I should run the job as: /usr/lib64/openmpi/bin/mpirun -mca mca_component_show_load_errors 1 -n 16 /opt/lammps-21Jan13/lmp_linux < zigzag.in
Is that correct? Regards, Jingjie Yeo Ph.D. Student School of Mechanical and Aerospace Engineering Nanyang Technological University, Singapore ________________________________________ From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] on behalf of Ralph Castain [r...@open-mpi.org] Sent: Sunday, 27 January, 2013 11:58:51 AM To: Open MPI Users Subject: Re: [OMPI users] Error when attempting to run LAMMPS on Centos 6.2 with OpenMPI One thing you might try: add "-mca mca_component_show_load_errors 1" to your mpirun cmd line. This will tell us if the libraries have some missing dependencies. It's the main reason I dislike installing from a package - the package assumes that your system is configured identically to that of the one used to generate the package. This is rarely the case - much easier to just download an OMPI tarball, configure and compile it yourself. On Jan 26, 2013, at 7:32 PM, #YEO JINGJIE# <jy...@e.ntu.edu.sg> wrote: > Hi Jeff, > > Sorry the original error info was lost along the way, I'm terribly new to > linux and I am trying to compile OMPI and to run a program, LAMMPS using the > command: > > /usr/lib64/openmpi/bin/mpirun -n 16 /opt/lammps-21Jan13/lmp_linux < zigzag.in > > And I received the errors: > > [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file ess_hnp_module.c at > line 194 > -------------------------------------------------------------------------- > It looks like orte_init failed for some reason; your parallel process is > likely to abort. There are many reasons that a parallel process can > fail during orte_init; some of which are due to configuration or > environment problems. This failure appears to be an internal failure; > here's some additional information (which may only be relevant to an > Open MPI developer): > orte_plm_base_select failed > --> Returned value Not found (-13) instead of ORTE_SUCCESS > -------------------------------------------------------------------------- > [NTU-2:24127] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file > runtime/orte_init.c at line 128 > -------------------------------------------------------------------------- > It looks like orte_init failed for some reason; your parallel process is > likely to abort. There are many reasons that a parallel process can > fail during orte_init; some of which are due to configuration or > environment problems. This failure appears to be an internal failure; > here's some additional information (which may only be relevant to an > Open MPI developer): > orte_ess_set_name failed > --> Returned value Not found (-13) instead of ORTE_SUCCESS > -------------------------------------------------------------------------- > [NTU-2:24127] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file orterun.c > at line 616 > > > I have attached the output for "ompi_info --all" in this email. Any advise > and guidance is greatly appreciated, thank you! > > > Regards, > Jingjie Yeo > Ph.D. Student > School of Mechanical and Aerospace Engineering > Nanyang Technological University, Singapore > > ________________________________________ > From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] on behalf of > Jeff Squyres (jsquyres) [jsquy...@cisco.com] > Sent: Saturday, 26 January, 2013 9:51:43 PM > To: Open MPI Users > Subject: Re: [OMPI users] Error when attempting to run LAMMPS on Centos 6.2 > with OpenMPI > > Can you provide more information? You really haven't said *what* the problem > is that is occurring (even in your followup emails to Ralph). Without such > information, it is very hard for us to guess what is wrong. > > Please send all the information listed here: > > http://www.open-mpi.org/community/help/ > > > > On Jan 25, 2013, at 8:51 PM, #YEO JINGJIE# <jy...@e.ntu.edu.sg> > wrote: > >> I tried to follow the installation instructions over here: >> >> http://amusecode.org/doc/install/install-prerequisites-redhat.html >> >> And I am using bash and yum. >> >> Regards, >> Jingjie Yeo >> Ph.D. Student >> School of Mechanical and Aerospace Engineering >> Nanyang Technological University, Singapore >> _______________________________________________ >> users mailing list >> us...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/users > > > -- > Jeff Squyres > jsquy...@cisco.com > For corporate legal information go to: > http://www.cisco.com/web/about/doing_business/legal/cri/ > > > _______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users<output.log>_______________________________________________ > users mailing list > us...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/users _______________________________________________ users mailing list us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/users
