: Open MPI Users
Subject: Re: [OMPI users] MPIRUN SEGMENTATION FAULT
I don’t see any way this could be compilation related - I suspect there is
simply some error in the program (e.g., forgetting to initialize some memory
region).
On Apr 23, 2016, at 8:03 AM, Elio Physics
mailto:elio-phys
d time to learn to
use gdb!
Best regards
Andy
On 04/23/2016 10:41 AM, Elio Physics wrote:
I am not really an expert with gdb. What is the core file? and how to use gdb?
I have got three files as an output when the executable is used. One is the
actual output which stops and the other two are er
file with gdb and
find out where it is failing.
On Apr 22, 2016, at 10:20 PM, Elio Physics
mailto:elio-phys...@live.com>> wrote:
One more thing i forgot to mention in my previous e-mail. In the output file I
get the following message:
2 total processes killed (some possibly by mpirun
One more thing i forgot to mention in my previous e-mail. In the output file I
get the following message:
2 total processes killed (some possibly by mpirun during cleanup)
Thanks
From: users on behalf of Elio Physics
Sent: Saturday, April 23, 2016 3:07
.
On Apr 22, 2016, at 8:32 PM, Elio Physics
mailto:elio-phys...@live.com>> wrote:
Dear all,
I have successfully compiled a code where the executable have been produced.
However when I started using the executable with mpirun, the code stopped with
the following error:
"mpirun not
Dear all,
I have successfully compiled a code where the executable have been produced.
However when I started using the executable with mpirun, the code stopped with
the following error:
"mpirun noticed that process rank 0 with PID 570 on node compute-1-9.local
exited on signal 11 (Segmentat
other option is to use the static mkl libs if they are available
> for example, your LIB line could be
>
> LIB = -static -L/opt/intel/composer_xe_2013_sp1/mkl/lib/intel64
> -lmkl_blas95_lp64 -lmkl_lapack95_lp64 -lmkl_intel_lp64 -lmkl_core
> -lmkl_sequential -dynamic
>
> Che
ed by your sysadmin */
Cheers,
Gilles
On 3/24/2016 11:03 AM, Elio Physics wrote:
Dear all,
I have been trying ,for the last week, compiling a code (SPRKKR). the
compilation went through ok. however, there are problems with the executable
(kkrscf6.3MPI) not finding the MKL library links. i could n
Dear all,
I have been trying ,for the last week, compiling a code (SPRKKR). the
compilation went through ok. however, there are problems with the executable
(kkrscf6.3MPI) not finding the MKL library links. i could not fix the
problem..I have tried several things but in vain..I will post both
00 Nick Papior Andersen :
2015-02-03 19:12 GMT+00:00 Elio Physics :
Hello,
thanks for your help. I have tried:
./configure --with-mpi-prefix=/usr FC=ifort CC=icc
But i still get the same error. Mind you if I compile it serially, that is
./configure FC=ifort CC=icc
It works perfectly fi
MPI installation already
present?
2015-02-03 17:13 GMT+00:00 Elio Physics :
Dear all,
II am trying to configure a code with mpi (for parallel processing) to do
some calculations so basically I type:
./configure
and I get:
configure: error: Fortran compiler does not provide iso_c_binding
Dear all,
II am trying to configure a code with mpi (for parallel processing) to do
some calculations so basically I type:
./configure
and I get:
configure: error: Fortran compiler does not provide iso_c_binding module. Use a
more recent version or a different compiler
which means that my GCC
nnier.a
> **
>
> Hence, if your QE directory is not immediately above your EPW directory
> everything will fail, because the EPW Makefile won't be able to find
> the bits and parts of QE that it needs.
> And this is *exactly what the error message in your first email
I../../Modules -I../../iotk/src \
> -I../../PW -I../../PH -I../../PP
> LIBOBJS = ../../flib/ptools.a ../../flib/flib.a \
> ../../clib/clib.a ../../iotk/src/libiotk.a
> W90LIB = ../../W90/libwannier.a
> **
>
> Hence, if your QE directory i
; -I../../PW -I../../PH -I../../PP
> LIBOBJS = ../../flib/ptools.a ../../flib/flib.a \
> ../../clib/clib.a ../../iotk/src/libiotk.a
> W90LIB = ../../W90/libwannier.a
> **
>
> Hence, if your QE directory is not immediately above your EPW directory
uot;.
> Could this have been the problem (older version)?
> Did you try the latest QE (4.0.3), and the latest EPW (3.0.0),
> as per the recipe on the EPW web site?
>
> http://epw.org.uk/Main/DownloadAndInstall
>
> **
>
> I hope this helps,
> Gus Correa
>
>
>
ou get it, configure it, etc?
>
> Do they have a mailing list or bulletin board where you could get
> specific help for their software?
> (Either on EPW or on QuantumExpresso (which seems to be required):
> http://www.quantum-espresso.org/)
> That would probably be the rig
] compilation problem with ifort
>
> Was the error that you listed the *first* error?
>
> Apparently various object files are missing from the
> ../../Modules/ directory, and were not compiled,
> suggesting something is amiss even before the
> compilation of the executable (ep
Dear all,
I am really a beginner in Fortran and Linux. I was trying to compile a software
(EPW). Everything was going fine (or maybe this is what I think):
mpif90 -o epw.x ../../Modules/atom.o ../../Modules/basic_algebra_routines.o
../../Modules/cell_base.o ../../Modules/check_stop.o ../../Module
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