Hi,
I have recently upgraded my system to openmpi-3.0. But despite proper
installation and gpu integration I keep receiving this error, as I was also
receiving in openmpi-1.4:
*$ mpirun -np 10 -bynode `which relion_preprocess_mpi` --i
input_micrographs.star --coord_dir "." --coord_suffix .coord
Let me shed a different light on that.
Once in a while, I run Open MPI between x86_64 and sparcv9, and it works
quite well as far as I am concerned.
Note this is the master branch, and I never try older nor releases branches.
Note you likely need to configure Open MPI with --enable-heteroge
On Apr 2, 2018, at 1:39 PM, dpchoudh . wrote:
>
> Sorry for a pedantic follow up:
>
> Is this (heterogeneous cluster support) something that is specified by
> the MPI standard (perhaps as an optional component)?
The MPI standard states that if you send a message, you should receive the same
va
Everything that Nathan said, plus it looks like you're running into general
running-Open-MPI-successfully issues (i.e., your "ompi_info: error while
loading shared libraries: libmpi.so.40: cannot open shared object file: No such
file or directory" error -- see
https://www.open-mpi.org/faq/?cate
Thanks a lot.
It worked very nicely for me.
On Tue, Apr 3, 2018 at 12:54 PM, Gilles Gouaillardet
wrote:
> In that case, you need to
>
> configure --with-cuda=/usr/local/cuda-8.0
>
>
> Cheers,
>
>
> Gilles
>
>
> On 4/3/2018 4:12 PM, abhisek Mondal wrote:
>
>> I have cuda installed in /usr/local/c
In that case, you need to
configure --with-cuda=/usr/local/cuda-8.0
Cheers,
Gilles
On 4/3/2018 4:12 PM, abhisek Mondal wrote:
I have cuda installed in /usr/local/cuda-8.0.
On Tue, Apr 3, 2018 at 12:37 PM, Gilles Gouaillardet
mailto:gil...@rist.or.jp>> wrote:
Did you install CUDA an
I have cuda installed in /usr/local/cuda-8.0.
On Tue, Apr 3, 2018 at 12:37 PM, Gilles Gouaillardet
wrote:
> Did you install CUDA and where ?
>
>
> On 4/3/2018 3:51 PM, abhisek Mondal wrote:
>
>> Thanks a lot. Installing the headers worked like a charm !
>>
>> I have a question though. Why does c
Did you install CUDA and where ?
On 4/3/2018 3:51 PM, abhisek Mondal wrote:
Thanks a lot. Installing the headers worked like a charm !
I have a question though. Why does configuration says:
Version: 3.0.1
Build MPI C bindings: yes
Build MPI C++ bindings (deprecated): no
Build MPI Fortran bin
