Re: [OMPI users] [EXTERNAL] Re: Segmentation fault on OMPI 1.6.5 built with gcc 4.4.7 and PGI pgfortran 11.10

2014-01-01 Thread Barrett, Brian W
Open MPI unfortunately has to play some tricks with the malloc system when using InfiniBand or the Cray interconnects. One other option is to set the environment variable OMPI_MCA_memory_linux_disable to some non-zero value. That will disable the evil memory hooks, which might help if PGI is

[OMPI users] some problems with openmpi-1.9a1r30100

2014-01-01 Thread Oscar Vega-Gisbert
Jeff added a jdoc target in '~/ompi-java/ompi/mpi/java/java/Makefile.am'. Javadoc is created in '~/ompi-java/ompi/mpi/java/java/doc' I think javadoc could be created if you select '--enable-mpi-java', and it could be copied in '~/ompi-install/share/javadoc'. From: Ralph Castain Subject: Re

Re: [OMPI users] some problems with openmpi-1.9a1r30100

2014-01-01 Thread Ralph Castain
The fix to build Java hasn't moved to 1.7 yet - waiting for Jeff to return from vacation to review it. Per your prior note about mpiexec hanging on Sparc, there is no reason why the Java bindings would alter that situation. So the problem is the same, and I won't create a new ticket for the jav

Re: [OMPI users] some problems with openmpi-1.9a1r30100

2014-01-01 Thread Ralph Castain
-bycore should still be available for backward compatibility, so I'll check that one. I'll have to look to see what your binding pattern didn't work https://svn.open-mpi.org/trac/ompi/ticket/4044 On Jan 1, 2014, at 1:48 AM, Siegmar Gross wrote: > > Option "-bycore" isn't available any longe

Re: [OMPI users] rankfile issues

2014-01-01 Thread Ralph Castain
This is clearly a problem with the allocator not picking up the rankfile nodes - I'll have to take a look at it https://svn.open-mpi.org/trac/ompi/ticket/4043 On Jan 1, 2014, at 1:48 AM, Siegmar Gross wrote: > Next I tried process binding. > > rf_linpc: > - > rank 0=linpc1 slot=0:0,1

Re: [OMPI users] Problem on big endian machines

2014-01-01 Thread Ralph Castain
Not sure I understand the problem here - are you saying that the proc ran, but then mpiexec hangs instead of exiting? On Jan 1, 2014, at 1:48 AM, Siegmar Gross wrote: > Nevertheless I have another problem with my small program. > > tyr small_prog 158 uname -p > sparc > tyr small_prog 159 ssh

Re: [OMPI users] Hetero apps just hang

2014-01-01 Thread Ralph Castain
We shouldn't just hang - that isn't right. Can you configure OMPI with --enable-debug and then add "-mca plm_base_verbose 5 -mca state_base_verbose 5" to your cmd line so we can see where it is hanging? On Jan 1, 2014, at 1:48 AM, Siegmar Gross wrote: > In the past I could run a small progra

Re: [OMPI users] some problems with openmpi-1.9a1r30100

2014-01-01 Thread Ralph Castain
I believe that the Javadoc doesn't install by default - Jeff? On Jan 1, 2014, at 1:48 AM, Siegmar Gross wrote: > "make install" didn't install the Javadoc documentation for the > new Java interface. Is it necessary to install it in a separate > step? > > tyr small_prog 118 ls -l /usr/local/ope

Re: [OMPI users] Solaris sigbus error in ompi_info

2014-01-01 Thread Ralph Castain
I'm going to split this apart so we can deal with these in a more manageable fashion. I have no ideas here as there isn't enough info - can you dig deeper to tell us where the sigbus happens? Meantime, I filed a ticket against it and we can capture your response there. https://svn.open-mpi.org

[OMPI users] some problems with openmpi-1.9a1r30100

2014-01-01 Thread Siegmar Gross
Hi, yesterday I installed openmpi-1.9a1r30100 on "Solaris 10 x86_64", "Solaris 10 Sparc", and "openSUSE Linux 12.1 x86_64" with Sun C 5.12. First of all the good news: "configure", "make", "make install", and "make check" completed without errors, i.e., "make check" doesn't produce a "SIGBUS Error