[OMPI users] Leading /usr/lib64 in LD_LIBRARY_PATH

2008-05-07 Thread Ingo Josopait
It seems that mpirun adds /usr/lib64 at the beginning of the LD_LIBRARY_PATH environment variable (/usr/lib64 usually corresponds to /usr/lib on non-amd64 systems): $ env | grep LIB LD_LIBRARY_PATH=/home/ingo/opt/lib:/home/ingo/opt32/lib:/home/ingo/opt/gcc/lib64 $ mpirun env | grep LIB LD_LIBRARY

[OMPI users] Unsubscribe.

2008-05-07 Thread David Bruun
Hi there. I've tried to unsubscribe twice with no luck. Can you help? Thanks, Dave -- Sent from my BlackBerry Wireless Handheld

Re: [OMPI users] Install BLACS and ScaLAPACK on Leopard

2008-05-07 Thread Gregory John Orris
All, I took this discussion off line since it's now not relevant to openmpi directly, but since I started it to get a truly 64 bit ATLAS lib under leopard you need to configure it with the -b 64 -Fa ac "-L/usr/ local/lib/x86_64 -m64" Doing otherwise will not lead to a 64-bit file. 'Nuf

Re: [OMPI users] Application logging

2008-05-07 Thread Alberto Giannetti
On May 7, 2008, at 5:45 PM, Barry Rountree wrote: On Wed, May 07, 2008 at 01:51:03PM -0400, Alberto Giannetti wrote: On May 7, 2008, at 1:32 PM, Barry Rountree wrote: On Wed, May 07, 2008 at 12:33:59PM -0400, Alberto Giannetti wrote: I need to log application-level messages on disk to trace

Re: [OMPI users] Install BLACS and ScaLAPACK on Leopard

2008-05-07 Thread Linwei Wang
Yeah..I built it...but I dun know why it is of the wrong architecture On May 7, 2008, at 6:07 PM, Doug Reeder wrote: Linwei, Did you build the liblapack.a file, it is of the wrong architecture. Doug Reeder On May 7, 2008, at 2:58 PM, Linwei Wang wrote: Hi, Doug I've checked the make

Re: [OMPI users] Install BLACS and ScaLAPACK on Leopard

2008-05-07 Thread Doug Reeder
Linwei, Did you build the liblapack.a file, it is of the wrong architecture. Doug Reeder On May 7, 2008, at 2:58 PM, Linwei Wang wrote: Hi, Doug I've checked the makefiles and make sure that flag -m64 is used for all the compiling but the error still exists.. Linwei On May 7, 2008, at 5:3

Re: [OMPI users] Install BLACS and ScaLAPACK on Leopard

2008-05-07 Thread Linwei Wang
Hi, Doug I've checked the makefiles and make sure that flag -m64 is used for all the compiling but the error still exists.. Linwei On May 7, 2008, at 5:33 PM, Doug Reeder wrote: Linwei, It looks like you are getting a mix of 32 and 64 bit code (hence the 'file is not of required archite

Re: [OMPI users] A simple mpi code hangs at MPI_Init?

2008-05-07 Thread Barry Rountree
On Wed, May 07, 2008 at 03:47:24PM -0400, Sang Chul Choi wrote: > Hi, > > I tried to run a hello world example of mpi code. It just hangs at > MPI_Init. My machine is installed with Ubuntu linux and I install some > package of open mpi. Compiling was okay, but running the code hangs at > MPI_Init.

Re: [OMPI users] Application logging

2008-05-07 Thread Barry Rountree
On Wed, May 07, 2008 at 01:51:03PM -0400, Alberto Giannetti wrote: > > On May 7, 2008, at 1:32 PM, Barry Rountree wrote: > > > On Wed, May 07, 2008 at 12:33:59PM -0400, Alberto Giannetti wrote: > >> I need to log application-level messages on disk to trace my program > >> activity. For better per

Re: [OMPI users] Install BLACS and ScaLAPACK on Leopard

2008-05-07 Thread Doug Reeder
Linwei, It looks like you are getting a mix of 32 and 64 bit code (hence the 'file is not of required architecture' error). Are you using the command line flag -m64 for some parts of the build and not for others. You need to use either -m32 or -m64 for all the builds. Doug Reeder On May 7

Re: [OMPI users] Install BLACS and ScaLAPACK on Leopard

2008-05-07 Thread Linwei Wang
Dear sir, Thanks very much for your detailed guideline~ I'm now trying to follow it out~ I've installed gcc 4.3 & openmpi~ When compiling CLAPACK, I'm trying to use the optimized BLAS library by ATLAS, so I set the BLASLIB in the make.inc as: BLASLIB = ../../libcblaswr.a -lcblas

Re: [OMPI users] A simple mpi code hangs at MPI_Init?

2008-05-07 Thread Aurélien Bouteiller
Hi, There is no mpd in Open MPI. mpirun will spawn everything needed for you. Make sure all your processes call MPI_Init, and not only the root process. If you mpirun -np 10, 10 processes need to go trough MPI_Init to allow for further progression. If this does not solve you problem, plea

Re: [OMPI users] crash with mpiBLAST

2008-05-07 Thread Tim Mattox
Hi Joe, Hopefully we can help you figure out what is going wrong with mpiBLAST and Open MPI. For starters, have a look here for what information would help us get to the root of the problem: http://www.open-mpi.org/community/help/ Reconfiguring (and recompiling) Open MPI with --enable-debug would

[OMPI users] A simple mpi code hangs at MPI_Init?

2008-05-07 Thread Sang Chul Choi
Hi, I tried to run a hello world example of mpi code. It just hangs at MPI_Init. My machine is installed with Ubuntu linux and I install some package of open mpi. Compiling was okay, but running the code hangs at MPI_Init. Is there any specific things that I should do before running mpi code such

Re: [OMPI users] Application logging

2008-05-07 Thread Alberto Giannetti
On May 7, 2008, at 1:32 PM, Barry Rountree wrote: On Wed, May 07, 2008 at 12:33:59PM -0400, Alberto Giannetti wrote: I need to log application-level messages on disk to trace my program activity. For better performances, one solution is to dedicate one processor to the actual I/O logging, whil

Re: [OMPI users] Application logging

2008-05-07 Thread Barry Rountree
On Wed, May 07, 2008 at 12:33:59PM -0400, Alberto Giannetti wrote: > I need to log application-level messages on disk to trace my program > activity. For better performances, one solution is to dedicate one > processor to the actual I/O logging, while the other working > processors would trac

Re: [OMPI users] MPE

2008-05-07 Thread Anthony Chan
MPE is not part of OMPI. You can download MPE from http://www.mcs.anl.gov/perfvis (the latest is the beta at ftp://ftp.mcs.anl.gov/pub/mpi/mpe/beta/mpe2-1.0.7rc3.tar.gz) Then follow the INSTALL and install MPE for OMPI. A.Chan - "Alberto Giannetti" wrote: > Is MPE part of OMPI? I can't fi

[OMPI users] Application logging

2008-05-07 Thread Alberto Giannetti
I need to log application-level messages on disk to trace my program activity. For better performances, one solution is to dedicate one processor to the actual I/O logging, while the other working processors would trace their activity through non-blocking, string message sends: /* LOGGER

[OMPI users] MPE

2008-05-07 Thread Alberto Giannetti
Is MPE part of OMPI? I can't find any reference in the FAQ.

Re: [OMPI users] machines swapping in running job[Scanned]

2008-05-07 Thread Arif Ali
Jeff Squyres wrote: Arif -- Sorry for the delay in replying. Believe it or not, almost this exact issue just came up with the IBM Benchmark Center; they were using Open MPI with MPIRandomAccess and experiencing problems with running out of memory. We didn't get a full set of data and exp

Re: [OMPI users] Problem with AlltoAll routine

2008-05-07 Thread Gabriele FATIGATI
I have attached informations requested about Infiniband net and OpenMPi enviroment. There is also LSF script used to launch the application. On Tue, 6 May 2008 21:30:17 -0500, Brad Benton said: > > Hello Gabriele, > > To help track down this problem, could I ask you to take a look at the Open >

[OMPI users] crash with mpiBLAST

2008-05-07 Thread Joe Landman
Hi Open-MPI team: I am working on a build of mpiBLAST 1.5.0-pio, and found that the code crashes immediately after launch with a seg fault. I used Open-MPI 1.2.6 built from the tarball (with just a --prefix directive). I did just try the code with MPICH 1.2.7p1, and it runs fine. What