I have not tried DSage. The manager of the cluster did not think it
was an appropriate tool for the cluster as the description of DSage
suggested it is only for coarse distribution (i.e. projects that can
be largely broken into separate parts). Unfortunately, my project
involves a sequential serie
I don't know if it is SQLalchemy or MySQL, but I also suspect it is
MySQL. I'll give PostgreSQL a try (should be an easy change, right?)
Thanks for the help
Dan
On Dec 19, 1:24 pm, Jason Grout wrote:
> Dan wrote:
> > Thanks for directing me.
>
> > The bottleneck appears to be queries to a MySQ
Did you test for the sql alchemy bottleneck without using dsage?
There were some pretty severe (at times) speed issues fixed with dsage
in 3.2.2.
On Fri, Dec 19, 2008 at 11:24 AM, Jason Grout
wrote:
>
> Dan wrote:
>> Thanks for directing me.
>>
>> The bottleneck appears to be queries to a MySQL
Dan wrote:
> Thanks for directing me.
>
> The bottleneck appears to be queries to a MySQL database made via
> SQLalchemy. I will need to make many complex queries, then do some
> simple statistical work on the results. But even the first query is
> taking a very long time. Any guidance you can gi
Thanks for directing me.
The bottleneck appears to be queries to a MySQL database made via
SQLalchemy. I will need to make many complex queries, then do some
simple statistical work on the results. But even the first query is
taking a very long time. Any guidance you can give is greatly
appreciat
Can you give a little more detail about what you are doing? Do you
have an idea as to what the main bottleneck is in your computation?
Cheers,
Marshall Hampton
On Dec 18, 2:52 pm, Dan wrote:
> I have been using Sage for a fairly intense computational biology
> project. I have been very please
On Thursday 18 December 2008, Dan wrote:
> I have been using Sage for a fairly intense computational biology
> project. I have been very pleased with the software, but when it was
> finely time to run my computations I learned that my hardware was
> grossly inadequate. I have since gained access
