[Rpy] error building rpy-1.0.3 for R 2.8.0

2008-12-16 Thread Paul Hartley
I recently upgraded R to 2.8.0 and built it with -enable-R-shlib. When I tried to re-build rpy 1.0.3, I get the following error, which I assume means something changed in R 2.8.0 that is not accounted for by rpy 1.0.3. I tried rpy 1.0.2 and got the same error. I have never had a previous issue r

Re: [Rpy] error building rpy-1.0.3 for R 2.8.0

2008-12-16 Thread Davide Cittaro
As posted in a previous email On Dec 16, 2008, at 10:45 AM, Paul Hartley wrote: I recently upgraded R to 2.8.0 and built it with -enable-R-shlib. When I tried to re-build rpy 1.0.3, I get the following error, which I assume means something changed in R 2.8.0 that is not accounted for by

Re: [Rpy] Not getting the same result presented in RPy2 manual

2008-12-16 Thread Laurent Gautier
Cc'ing the answer to the list (as it may interest others). Marcos Silva wrote: > Hi Laurent, > > Thanks for your quick response. > > By the way, can I use **r_repr()** [well, by now I don't know for what > is this function for :) ] to solve the problem with the R stem() > function that I men

[Rpy] Specifying na.action?

2008-12-16 Thread Gary Strangman
Forgive this seemingly simple question for rpy2 ... how do you specify 'dotted' function arguments from python? I want to specify the na.action=na.omit for lme, but the python code below (which I though would be equivalent to that required by rpy) doesn't work for rpy2: R: > fit = lme(fmla,dat

Re: [Rpy] error building rpy-1.0.3 for R 2.8.0

2008-12-16 Thread Paul Hartley
thanks -- I had trouble searching the listserv archives for this workaround -- if this is related to R 2.8.0, perhaps the rpy maintainers could post this workaround to the installation documentation -- seems like it'd be useful for a lot of people still using the 1.0 version. paul On Tue, Dec 16,

Re: [Rpy] Not getting the same result presented in RPy2 manual

2008-12-16 Thread Marcos Silva
Hi Laurent, Once again, thanks very much. I'm not a Python user. I'm trying learn a little about it, so it was useful your hint about the 'pydoc string'. I will try the approach you suggested using R's sink() function or maybe the capture.output() function. As the R's stem() function works on R

[Rpy] SF.net SVN: rpy:[718] rpy2/branches/version_2.0.x

2008-12-16 Thread lgautier
Revision: 718 http://rpy.svn.sourceforge.net/rpy/?rev=718&view=rev Author: lgautier Date: 2008-12-17 06:59:43 + (Wed, 17 Dec 2008) Log Message: --- Fixed setup.py to get version number from rpy/__init__.py Modified Paths: -- rpy2/branches/version_2.0.x/