I recently upgraded R to 2.8.0 and built it with -enable-R-shlib. When I
tried to re-build rpy 1.0.3, I get the following error, which I assume means
something changed in R 2.8.0 that is not accounted for by rpy 1.0.3. I
tried rpy 1.0.2 and got the same error. I have never had a previous issue
re-installing rpy when I upgraded R in the past. Could you let me know if
there is a workaround; otherwise I'll just have to fall back to the previous
R version (and hope that fixes the issue!). rpy2 looks like a nice upgrade,
but right now I don't have time to do the migration and the testing to
ensure the migration is error-free. thanks,
Paul
execute: python setup.py install
RHOMES= []
DEBUG= True
Setting RHOMES to ['/usr/local/lib64/R']
### Using R verion 2.8.0 installed at /usr/local/lib64/R ###
RHOME= /usr/local/lib64/R
copying src/rpymodule.c -> src/rpymodule2080.c
copying src/R_eval.c -> src/R_eval2080.c
copying src/io.c -> src/io2080.c
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.5
copying rpy.py -> build/lib.linux-x86_64-2.5
copying rpy_io.py -> build/lib.linux-x86_64-2.5
copying rpy_version.py -> build/lib.linux-x86_64-2.5
copying rpy_tools.py -> build/lib.linux-x86_64-2.5
copying rpy_options.py -> build/lib.linux-x86_64-2.5
copying rpy_wintools.py -> build/lib.linux-x86_64-2.5
running build_ext
building '_rpy2080' extension
creating build/temp.linux-x86_64-2.5
creating build/temp.linux-x86_64-2.5/src
gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall
-Wstrict-prototypes -fPIC -DWITH_NUMERIC=3 -DPY_ARRAY_TYPES_PREFIX=PyArray_
-DRPY_SHNAME=_rpy2080 -DINIT_RPY=init_rpy2080 -UPRE_2_2
-I/usr/local/lib64/R/include -Isrc -I/usr/share/R/include
-I/usr/local/lib/python2.5/site-packages/numpy/core/include
-I/usr/local/include/python2.5 -c src/rpymodule2080.c -o
build/temp.linux-x86_64-2.5/src/rpymodule2080.o -shared
In file included from src/RPy.h:57,
from src/rpymodule2080.c:51:
/usr/local/lib64/R/include/R_ext/Rdynload.h:26: warning: function
declaration isn't a prototype
In file included from /usr/local/lib64/R/include/R_ext/GraphicsEngine.h:183,
from /usr/local/lib64/R/include/Rdevices.h:37,
from src/RPy.h:77,
from src/rpymodule2080.c:51:
/usr/local/lib64/R/include/R_ext/GraphicsDevice.h:83: error: conflicting
types for 'DevDesc'
/usr/local/lib64/R/include/Rgraphics.h:73: error: previous declaration of
'DevDesc' was here
/usr/local/lib64/R/include/R_ext/GraphicsDevice.h:253: warning: function
declaration isn't a prototype
src/rpymodule2080.c:1565: warning: initialization from incompatible pointer
type
src/rpymodule2080.c:1568: warning: 'intargfunc' is deprecated
src/rpymodule2080.c:1568: warning: initialization from incompatible pointer
type
src/rpymodule2080.c:1569: warning: 'intintargfunc' is deprecated
src/rpymodule2080.c:1569: warning: initialization from incompatible pointer
type
src/rpymodule2080.c:1570: warning: initialization from incompatible pointer
type
src/rpymodule2080.c: In function 'r_finalize':
src/rpymodule2080.c:1781: warning: implicit declaration of function
'KillAllDevices'
src/rpymodule2080.c:1784: warning: implicit declaration of function
'R_CleanTempDir'
src/rpymodule2080.c:1776: warning: unused variable 'tmpdir'
src/rpymodule2080.c:1775: warning: unused variable 'buf'
error: command 'gcc' failed with exit status 1
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