Re: [Rpy] undefined symbol: Rf_allocS4Object

2009-10-09 Thread Laurent Gautier
Did you solve the problem ? I cannot think of what could be obviously happening on your machine (especially since you have other machines with which everything is working fine). L. Sebastian Z.urek wrote: >> Did you compile R with --enable-R-shlib ? (I should have started there, >> I suppose).

Re: [Rpy] undefined symbol: Rf_allocS4Object

2009-10-05 Thread Sebastian Żurek
> Did you compile R with --enable-R-shlib ? (I should have started there, > I suppose). Yes, this flag is enabled. (I should have starded with all R configure options provided, I suppose :D I've used only the two: --prefix=/home/sebzur/R_2.8.1 and --enable-R-shlib) Without --enable-R-shlib rpy2

Re: [Rpy] undefined symbol: Rf_allocS4Object

2009-10-05 Thread Laurent Gautier
Sebastian Żurek wrote: (...) Did you compile R with --enable-R-shlib ? (I should have started there, I suppose). If you are not sure, what gives ls /home/sebzur/R_2.8.1/lib/R/lib (...) > Can the Rdynload compiling problem be related to my issue? > Likely not (those warnings are around for eve

Re: [Rpy] undefined symbol: Rf_allocS4Object

2009-10-05 Thread Sebastian Żurek
> Keep this thread on the list, please. Someone else with the same problem > in the future may find it helpful. The last e-mail was supposed to be send to this list, but it accidentally went to Laurent private e-mail (I've attached the full context is at the bottom of this message) >What woul

Re: [Rpy] undefined symbol: Rf_allocS4Object

2009-10-05 Thread Laurent Gautier
I can guess that you are using R-2.8.1 from the path in the error messate, but version numbers for Python and rpy2, and the OS you are using, would be nice to have. This might be caused by mixing R versions. What do return the following shell commands: which R R --version L. Sebasti

[Rpy] undefined symbol: Rf_allocS4Object

2009-10-04 Thread Sebastian Zurek
Hi! I've got the following problem and I can not find the reason: During the rpy2.robjects import, the dyn.load can not load the libs, the error output is: >>> import rpy2 >>> import rpy2.robjects Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/home/sebzur/R_2