Hi Laurent,
I have created a issue on this problem on bitbucket.
Thanks a lot,
Xinxin
On Sun, Dec 14, 2014 at 10:25 AM, Laurent Gautier
wrote:
>
> Hi Xinxin,
>
> It might be better to follow up on the bitbucket issue page (
> https://bitbucket.org/lgautier/rpy2/issue/246/typeerror-nonetype-o
Hi Xinxin,
It might be better to follow up on the bitbucket issue page
(https://bitbucket.org/lgautier/rpy2/issue/246/typeerror-nonetype-object-is-not-iterable)
rather than on the list. The issue page can be associated easily with
revisions in the code, and allow you to share the full logs fro
Hi Laurent,
I am using gcc rather than clang.
I have corrected the typo in setup.py. This time I can run more installing
steps.
However, the installation was interrupted at the gcc compiling stage.
It seems that the problem is due to the unsuitable string after the
paramter -I.
=
gc
Typo: warnigs -> warnings
Try again.
Are you using clang rather than gcc by the way ?
2014-12-13 0:19 GMT-05:00 Xinxin Peng :
>
> Hi Laurent,
>
> There are still errors in other place.
>
>
> Traceback (most recent call last):
> File "setup.py", line 283, in
> ri_ext = getRinterface_ext()
>
Hi Laurent,
There are still errors in other place.
Traceback (most recent call last):
File "setup.py", line 283, in
ri_ext = getRinterface_ext()
File "setup.py", line 203, in getRinterface_ext
warnigs.warn('No include specified')
NameError: global name 'warnigs' is not defined
Tha
That's an error in a different place. We are progressing
Try again:
pip install https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
2014-12-12 22:15 GMT-05:00 Xinxin Peng :
>
> Hi Lanrent,
>
> Error report still exists.
>
> Traceback (most recent call last):
> File "setup.py", line
Hi Lanrent,
Error report still exists.
Traceback (most recent call last):
File "setup.py", line 280, in
ri_ext = getRinterface_ext()
File "setup.py", line 202, in getRinterface_ext
include_dirs.extend(args.I)
TypeError: 'NoneType' object is not iterable
Thanks a lot.
Xinxin
On Sat
Typo in the fix.
Try a snapshot from bitbucket:
pip install https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
2014-12-12 21:08 GMT-05:00 Xinxin Peng :
>
> Hi Laurent,
>
> The newly released package still doesn't seem to work for me.
> This time I ran into different errors.
>
> Traceb
Hi Laurent,
The newly released package still doesn't seem to work for me.
This time I ran into different errors.
Traceback (most recent call last):
File "setup.py", line 280, in
ri_ext = getRinterface_ext()
File "setup.py", line 190, in getRinterface_ext
ldf = shlex.split(' '.join(re
rpy2-2.5.3 is now on Pypi. Try:
pip install rpy2 --upgrade
2014-12-12 12:48 GMT-05:00 Ian York :
>
> For what it's worth, I noted the same bug a couple weeks ago. In case
> it didn't go through, I said:
>
> I have installed rpy2 on this machine in the past and had no problems,
> but now I am unab
For what it's worth, I noted the same bug a couple weeks ago. In case
it didn't go through, I said:
I have installed rpy2 on this machine in the past and had no problems,
but now I am unable to get rpy2 properly installed either using pip or
source. I'm running OSX 10.9.5 (Mavericks), and R vers
This might be a genuine bug.
I opened an issue:
https://bitbucket.org/lgautier/rpy2/issue/247/error-when-getting-the-r-configuration-and
2014-12-12 7:21 GMT-05:00 Laurent Gautier :
>
> Hi,
>
> This might be a bug in the install script. Consider opening an issue on
> bitbucket.
>
> Thanks,
>
> Lau
Hi,
This might be a bug in the install script. Consider opening an issue on
bitbucket.
Thanks,
Laurent
On Dec 12, 2014 3:57 AM, "Xinxin Peng" wrote:
> Hi all,
>
> I have been trying to install rpy2-2.5.2 on a high performance computer
> and run into the following errors:
>
> Traceback (most re
Hi all,
I have been trying to install rpy2-2.5.2 on a high performance computer and
run into the following errors:
Traceback (most recent call last):
File "setup.py", line 275, in
ri_ext = getRinterface_ext()
File "setup.py", line 189, in getRinterface_ext
ldf = shlex.split(' '.join(
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