[Rpy] Remove compiled version

2010-01-08 Thread Paul Geeleher
Hi, I installed Rpy following the instructions in the README file. Thing is I want to remove this version and use the version in the Ubuntu repository instead. How do I completely remove the original version? I'm sure its very simple I can't find this information anywhere. Thanks Paul

[Rpy] Error loading bioconductor affy library..

2009-09-11 Thread Paul Geeleher
LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base -- Paul Geeleher School of Mathematics, Statistics and Applied Mathematics National University of Ireland Galway Ireland

[Rpy] Keep rpy object loaded in memory after cgi script ends

2009-02-17 Thread Paul Geeleher
ked up by the next script, so as to save the time it takes to repeatedly write my session to and read it from the hard disk? -- Paul Geeleher School of Mathematics, Statistics and Applied Mathematics National University

Re: [Rpy] Problems installing RPy on 64 bit Suse Enterprise (again)

2008-11-17 Thread Paul Geeleher
Excellent! I've finally managed to get this working. I deleted the contents of the "/usr/local/lib/python2.5/site-packages/" directory, this included the offending "_rpy2062.so" file, setup.py seems to have recreated the files in this directory using the new python which has done the trick. If yo

Re: [Rpy] Problems installing RPy on 64 bit Suse Enterprise (again)

2008-11-17 Thread Paul Geeleher
Excellent! I've finally managed to get this working. I deleted the contents of the "/usr/local/lib/python2.5/site-packages/" directory, this included the offending "_rpy2062.so" file, setup.py seems to have recreated the files in this directory using the new python which has done the trick. If yo

Re: [Rpy] Problems installing RPy on 64 bit Suse Enterprise (again)

2008-11-17 Thread Paul Geeleher
> -which python are you importing into? > > Laurent > > 2008/11/16 Paul Geeleher <[EMAIL PROTECTED]>: > > Hi again. > > > > I did a "find / -name "*libpython*"" which should find any libpython > files > > (I think). It outputted

Re: [Rpy] Problems installing RPy on 64 bit Suse Enterprise (again)

2008-11-16 Thread Paul Geeleher
Is the libpython in /usr/lib being picked up instead of the new one at > runtime? can you put this aside and try again? > > 2008/11/15 Paul Geeleher <[EMAIL PROTECTED]>: > > Hi again, > > > > Building version 2.5.2 of Python from source (overwriting version > >

Re: [Rpy] Problems installing RPy on 64 bit Suse Enterprise (again)

2008-11-15 Thread Paul Geeleher
;) >>> from rpy import * Any ideas here would be greatly appreciated. Thanks, -Paul. On 11/14/08, Paul Geeleher <[EMAIL PROTECTED]> wrote: > > Thanks for the response Laurent. I'll give it a go and let you know how it > works out. > > -Paul. &

Re: [Rpy] Problems installing RPy on 64 bit Suse Enterprise (again)

2008-11-14 Thread Paul Geeleher
use a stripped library > to link against. how would the linker know the address of those > symbols in this library? > > In any case building your own python might be a workaround... > > Laurent > > > > > > 2008/11/14 Paul Geeleher <[EMAIL PROTECTED]>: > >

[Rpy] Problems installing RPy on 64 bit Suse Enterprise (again)

2008-11-14 Thread Paul Geeleher
Hi I posted this message about 10 days ago and I didn't get a reply, so I'm going to chance re-posting, hopefully somebody can help me out because I still haven't managed to fix it... ___ Hi all, I'm trying to install Rpy on a 64 bit Suse Enterprise Edition Server. I'm running R ve

[Rpy] Problems installing RPy on 64 bit Suse Enterprise

2008-11-05 Thread Paul Geeleher
27; is: "libpython2.5.so: symbolic link to `libpython2.5.so.1.0'" So its a link and the output of 'file libpython2.5.so.1.0' is: "libpython2.5.so.1.0: ELF 64-bit LSB shared object, AMD x86-64, version 1 (SYSV), stripped&

Re: [Rpy] Problems installing on 64 bit Suse...

2008-07-19 Thread Paul Geeleher
pen source project, > along with a healthy diet, reduces your potential for chronic lameness > and boredom. Vote Now at http://www.sourceforge.net/community/cca08 > ___ > rpy-list mailing list > rpy-list@lists.sourcef

[Rpy] Problems installing on 64 bit Suse...

2008-07-10 Thread Paul Geeleher
ognized: File format not recognized collect2: ld returned 1 exit status error: command 'gcc' failed with exit status 1 Any ideas here? I need this bad! Thanks! -- Paul Geeleher Department of Mathematics National University of Ireland Galway Ireland -

Re: [Rpy] Installing rpy on a 64 bit ubuntu server

2008-04-11 Thread Paul Geeleher
quot;/usr/lib64/R" is RHOME. -Paul. On 4/11/08, Laurent Gautier <[EMAIL PROTECTED]> wrote: > One line in the log tells: > src/RPy.h:56:20: error: Python.h: No such file or directory > > wouldn't you have the development headers missing ? > > > > 2008/4/11, P

[Rpy] Installing rpy on a 64 bit ubuntu server

2008-04-11 Thread Paul Geeleher
Hi, I'm wondering if anyone has experience of installing rpy on 64 bit ubuntu gutsty? I've built R version 2.6.2 from source and am running python version 2.5.1. I'm fairly certain i've followed all instructions correctly (R as shlib, configuring path to R library etc.), but when i go to install