Hi guys, I'm getting this error below when I try to load the bioconductor
affy library through rpy. It loads find in R though. Its a 64 bit opensuse
system. Any ideas would be greatly appreciated! Paul.
>>> from rpy import r
>>> r('library("affy")')
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/local/lib/python2.5/site-packages/rpy.py", line 322, in
__call__
return self.eval(self.parse(text=s))
rpy.RPy_RException: Error: package/namespace load failed for 'affy'
--------------------------------------------
sessionInfo()
R version 2.9.0 (2009-04-17)
x86_64-unknown-linux-gnu
locale:
LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
--------------------------------------------
--
Paul Geeleher
School of Mathematics, Statistics and Applied Mathematics
National University of Ireland
Galway
Ireland
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