Re: [Rpy] Errors in installing rpy2

2014-12-12 Thread Xinxin Peng
Hi Laurent, There are still errors in other place. Traceback (most recent call last): File "setup.py", line 283, in ri_ext = getRinterface_ext() File "setup.py", line 203, in getRinterface_ext warnigs.warn('No include specified') NameError: global name 'warnigs' is not defined Tha

Re: [Rpy] Errors in installing rpy2

2014-12-12 Thread Laurent Gautier
That's an error in a different place. We are progressing Try again: pip install https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz 2014-12-12 22:15 GMT-05:00 Xinxin Peng : > > Hi Lanrent, > > Error report still exists. > > Traceback (most recent call last): > File "setup.py", line

Re: [Rpy] Errors in installing rpy2

2014-12-12 Thread Xinxin Peng
Hi Lanrent, Error report still exists. Traceback (most recent call last): File "setup.py", line 280, in ri_ext = getRinterface_ext() File "setup.py", line 202, in getRinterface_ext include_dirs.extend(args.I) TypeError: 'NoneType' object is not iterable Thanks a lot. Xinxin On Sat

Re: [Rpy] Errors in installing rpy2

2014-12-12 Thread Laurent Gautier
Typo in the fix. Try a snapshot from bitbucket: pip install https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz 2014-12-12 21:08 GMT-05:00 Xinxin Peng : > > Hi Laurent, > > The newly released package still doesn't seem to work for me. > This time I ran into different errors. > > Traceb

Re: [Rpy] Errors in installing rpy2

2014-12-12 Thread Xinxin Peng
Hi Laurent, The newly released package still doesn't seem to work for me. This time I ran into different errors. Traceback (most recent call last): File "setup.py", line 280, in ri_ext = getRinterface_ext() File "setup.py", line 190, in getRinterface_ext ldf = shlex.split(' '.join(re

[Rpy] rpy2-2.5.3 is released and on Pypi

2014-12-12 Thread Laurent Gautier
This is an other small incremental bugfix release. Release 2.5.3 = Changes - `setup.py` has `install_requires` in addition to `requires` in the hope to fix the missing dependency with Python 2 (:mod:`singledispatch` is required but not installed). Bugs fixed - Extracting configur

Re: [Rpy] Errors in installing rpy2

2014-12-12 Thread Laurent Gautier
rpy2-2.5.3 is now on Pypi. Try: pip install rpy2 --upgrade 2014-12-12 12:48 GMT-05:00 Ian York : > > For what it's worth, I noted the same bug a couple weeks ago. In case > it didn't go through, I said: > > I have installed rpy2 on this machine in the past and had no problems, > but now I am unab

Re: [Rpy] Errors in installing rpy2

2014-12-12 Thread Ian York
For what it's worth, I noted the same bug a couple weeks ago. In case it didn't go through, I said: I have installed rpy2 on this machine in the past and had no problems, but now I am unable to get rpy2 properly installed either using pip or source. I'm running OSX 10.9.5 (Mavericks), and R vers

Re: [Rpy] Errors in installing rpy2

2014-12-12 Thread Laurent Gautier
This might be a genuine bug. I opened an issue: https://bitbucket.org/lgautier/rpy2/issue/247/error-when-getting-the-r-configuration-and 2014-12-12 7:21 GMT-05:00 Laurent Gautier : > > Hi, > > This might be a bug in the install script. Consider opening an issue on > bitbucket. > > Thanks, > > Lau

Re: [Rpy] Errors in installing rpy2

2014-12-12 Thread Laurent Gautier
Hi, This might be a bug in the install script. Consider opening an issue on bitbucket. Thanks, Laurent On Dec 12, 2014 3:57 AM, "Xinxin Peng" wrote: > Hi all, > > I have been trying to install rpy2-2.5.2 on a high performance computer > and run into the following errors: > > Traceback (most re

[Rpy] Errors in installing rpy2

2014-12-12 Thread Xinxin Peng
Hi all, I have been trying to install rpy2-2.5.2 on a high performance computer and run into the following errors: Traceback (most recent call last): File "setup.py", line 275, in ri_ext = getRinterface_ext() File "setup.py", line 189, in getRinterface_ext ldf = shlex.split(' '.join(