> Did you compile R with --enable-R-shlib ? (I should have started there,
> I suppose).
Yes, this flag is enabled. (I should have starded with all R configure
options provided, I suppose :D I've used only the two:
--prefix=/home/sebzur/R_2.8.1 and --enable-R-shlib)
Without --enable-R-shlib rpy2
Sebastian Żurek wrote:
(...)
Did you compile R with --enable-R-shlib ? (I should have started there,
I suppose).
If you are not sure, what gives
ls /home/sebzur/R_2.8.1/lib/R/lib
(...)
> Can the Rdynload compiling problem be related to my issue?
>
Likely not (those warnings are around for eve
On Mon, Oct 5, 2009 at 3:53 PM, Nick Schurch wrote:
>
> Thanks for the answer peter, but I'm still having an issue...
>
> When I try:
>
> result<-r.pvclust(data=data, method_hclust="complete",
> method_dist="correlation", nboot=1, init_rand=TRUE, seed=NULL)
>
> I get:
>
> NameError: name 'resu
> Keep this thread on the list, please. Someone else with the same problem
> in the future may find it helpful.
The last e-mail was supposed to be send to this list, but it accidentally
went to Laurent private e-mail (I've attached the full context is at the
bottom of this message)
>What woul
Thanks for the answer peter, but I'm still having an issue...
When I try:
result<-r.pvclust(data=data, method_hclust="complete",
method_dist="correlation", nboot=1, init_rand=TRUE, seed=NULL)
I get:
NameError: name 'result' is not defined
Do I need to predefine result as an rpy object or s
I can guess that you are using R-2.8.1 from the path in the error
messate, but version numbers for Python and rpy2, and the OS you are
using, would be nice to have.
This might be caused by mixing R versions. What do return the following
shell commands:
which R
R --version
L.
Sebasti
This seems to have resolved my problem:
http://www.mail-archive.com/rpy-list@lists.sourceforge.net/msg01500.html
Cheers,
Willem
On Mon, Oct 5, 2009 at 11:57, Peter wrote:
> On Mon, Oct 5, 2009 at 10:43 AM, Willem Ligtenberg
> wrote:
>>
>> Hi,
>> I need to build rpy on our cluster. Therefore I
The following may make one:
LD_LIBRARY_PATH=/home/wligtenb/R/lib(64)?/R/lib:${LD_LIBRARY_PATH}
(note that it might be 'lib' or 'lib64').
Laurent
Willem Ligtenberg wrote:
> Hi Peter,
>
> That doesn't make any difference.
>
> Cheers,
>
> Willem
>
> On Mon, Oct 5, 2009 at 11:57, Peter wrot
Hi Peter,
That doesn't make any difference.
Cheers,
Willem
On Mon, Oct 5, 2009 at 11:57, Peter wrote:
> On Mon, Oct 5, 2009 at 10:43 AM, Willem Ligtenberg
> wrote:
>>
>> Hi,
>> I need to build rpy on our cluster. Therefore I can only build stuff
>> in my home directory.
>> I have successfully
On Mon, Oct 5, 2009 at 10:43 AM, Willem Ligtenberg
wrote:
>
> Hi,
> I need to build rpy on our cluster. Therefore I can only build stuff
> in my home directory.
> I have successfully installed Python, numpy and R in my home. Now I am
> running into problems with rpy.
> I configured R as follows:
>
Hi,
I need to build rpy on our cluster. Therefore I can only build stuff
in my home directory.
I have successfully installed Python, numpy and R in my home. Now I am
running into problems with rpy.
I configured R as follows:
./configure --prefix=/home/wligtenb/R --enable-R-shlib
make prefix=/home/
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