Re: [R-sig-phylo] A perfect storm: phylogenetic trees, random effects and zero-inflated binomial data

Hi Diederik, you can use MCMCglmm. The package allows for inclusion of phylogenetic information, random effects and zero-inflated response variables. However, it may take some time to get familiar with the package. Best, J — Jörg Albrecht, PhD Postdoctoral researcher Institute of Nature

Re: [R-sig-phylo] Accounting for phylogeny in binary predictor, binary response data

l", prior = prior1, data = dat) # fixed effects should be around zero and one (+/- monte carlo error) summary(m1$Sol) # phylogenetic ICC should be 1/(2 + pi^2/3) = 0.189 (+/- monte carlo error) summary(m1$VCV[, 1] / (rowSums(m1$VCV) + pi^2/3)) Hope this helps, Jörg — Jörg Alb