[R-sig-phylo] rates for discrete traits

ways to do this but I don’t want to reinvent the wheel if it is already implemented. Has anyone seen anything like this? Cheers -- *Heath Blackmon Graduate Teaching Assistant Dept of Biology - Box 19498 Univ. of Texas, Arlington Arlington, TX 76019 Office: ERB450 Phone 817-201-6174

[R-sig-phylo] likelihood of discrete data

this short of writing the whole process from scratch. Any suggestions or pointers would be much appreciated. Cheers -- *Heath Blackmon Graduate Research Assistant Dept of Biology - Box 19498 Univ. of Texas, Arlington Arlington, TX 76019 Office: ERB450 Phone 817-201-6174 * [[alternative

Re: [R-sig-phylo] Remove selected taxa from a matrix based on a species list

phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at > http://www.mail-archive.com/r-sig-phylo@r-project.org/ > -- *Heath Blackmon Graduate Teaching Assistant Dept of Biology - Box 19498 Un

[R-sig-phylo] combined CI across trees

I've used fitContinuous in Geiger to estimate the parameters for an OU model, and I've used hessian=T to get the 95% confidence intervals. I've done this on 100 trees and would like to combine the confidence intervals so that my estimate takes into account phylogenetic uncertainty. Any suggestion

Re: [R-sig-phylo] Accounting for phylogeny in binary predictor, binary response data

ylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at > http://www.mail-archive.com/r-sig-phylo@r-project.org/ > -- *Heath Blackmon, Ph.D.* *Postdoctoral Researcher* *University of Minnesota* *coleoguy.github.io <ht

Re: [R-sig-phylo] Determining Order of Trait Evolution

> > > [[alternative HTML version deleted]] > > ___ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at > http://www.mail-archive.com/r-sig-phylo

Re: [R-sig-phylo] Determining Order of Trait Evolution

your discrete trait is adequate for the empirical trait. Also, most of those ideas are not mine but came from an anonymous reviewer of a recent paper. Happy to chat off the list if that is helpful. Heath *Heath Blackmon, Ph.D. (he/him/his)* *Associate Professor* *Associate Department He