[R-sig-phylo] Cannot read nexus tree from iTOL in R with read.nexus or read.tree

2014-03-19 Thread Gygli, Gudrun
Dear All, I am trying to read a nexus tree created via iTOL into R. However, this is not to working. I am using the following tree: Laccaria_bicolor,Gloeophyllum_trabeum),Dacryopinax_sp._DJM-731_SS1,Trichosporon_asahii),Rhodosporidium_toruloides),

[R-sig-phylo] colouring tree branches like tips

2016-01-26 Thread Gygli, Gudrun
Dear fellow phylo-R users, I am trying to colour tree (terminal and non terminal) branches in the same colour as the tip of said branch. To illustrate, see the code below, which is almost doing what I want. You can see that only colouring a specific tip, which is called A in this example, is

Re: [R-sig-phylo] colouring tree branches like tips

2016-01-26 Thread Gygli, Gudrun
/en/show/Bioinformatics-structural-biology-and-molecular-modeling-of-Vanillyl-Alcohol-Oxidases-VAOs.htm From: Klaus Schliep Sent: Tuesday, January 26, 2016 10:34 AM To: Gygli, Gudrun Cc: r-sig-phylo@r-project.org Subject: Re: [R-sig-phylo] colouring tree branches like t