I have a problem running phymltest from ape 3.4.
The call from R works fine, i can see the phyml running, and in some point
an error occurs when the function try to read nnn_stats.txt file, because
the output write (at least thats I see in my computer) dont add the "txt"
extension. Same thing for
value = TRUE)
> loglik <- as.numeric(sub(". Log-likelihood:", "", l))
> names(loglik) <- ape:::.phymltest.model
> class(loglik) <- "phymltest"
>
> where 'loglik' is the (expected) output from phymltest(), you can change
> its name (in
