[R-sig-phylo] Stuck with Phylomatic tree!

, myrsinaceae/myrsine/myrsine_lorentziana, myrsinaceae/myrsine/myrsine_sp, myrsinaceae/myrsine/myrsine_umbellata, ]; -- Dr. Alexandre F. Souza Professor Ajunto II Universidade Federal do Rio Grande do Norte CB, Departamento de Ecologia Campus Universitário - Lagoa Nova 59072-970 - Natal, RN - Brasil lattes

Re: [R-sig-phylo] Stuck with Phylomatic tree!

y(rncl) > tre <- rncl::read_newick_phylo(file="test.tre") > > where test.tre is a file that contains the tree string you put in the > email. The function returns a tree in ape's phylo format (with the > singleton nodes removed). > > cheers, > -- François

Re: [R-sig-phylo] Stuck with Phylomatic tree!

. Alexandre F. Souza Professor Ajunto II Universidade Federal do Rio Grande do Norte CB, Departamento de Ecologia Campus Universitário - Lagoa Nova 59072-970 - Natal, RN - Brasil lattes: lattes.cnpq.br/7844758818522706 http://www.docente.ufrn.br/alexsouza [[alternative HTML version deleted

[R-sig-phylo] Node Ages Without Phylocom

s)))ericales_to_asterales,griselinia_ruscifolia)asterids,seguieria_aculeata)),roupala_brasiliensis)sabiales_to_asterales,(((aiouea_saligna,(cinnamomum_amoenum,cinnamomum_glaziovii)cinnamomum,(cryptocarya_aschersoniana,cryptocarya_moschata)cryptocarya,nectandra_megapotamica,(ocotea_indecora,ocot

Re: [R-sig-phylo] Node Ages Without Phylocom

Hi Marcelino, Thank you for answering. Are you running Phylocom on a Mac or a PC? I am also running Phylocom 4.2 (which comes with "4.1" at its heading), but I am running on a PC. Cheers, Alexandre -- Dr. Alexandre F. Souza Professor Ajunto II Universidade Federal do Rio Grande d

[R-sig-phylo] To include or not to include spatial autocorrelation co-variables?

ontributing to explain the probability of survivorship, why should anyone keep it? How could I drop the other non-significant fixed variables if I decide to keep the MEM? What do you think? Thanks in advence for any thoughts, Cheers, Alexandre -- Dr. Alexandre F. Souza Professor Adjunto II

[R-sig-phylo] How to embed a function within a matrix

contents in R I would not like to restrict this theme to Excel. Thank you very much in advance, Alexandre -- Dr. Alexandre F. Souza Professor Adjunto III Universidade Federal do Rio Grande do Norte CB, Departamento de Ecologia Campus Universitário - Lagoa Nova 59072-970 - Natal, RN - Brasil lattes

[R-sig-phylo] Conversion between phylo and hclust objects?

n", method = "average", p=0.5)$cons dendro.upgma = as.hclust.phylo(arvore.upgma) plot(dendro.upgma) The resulting tree is a total mess! -- Dr. Alexandre F. Souza Professor Adjunto III Universidade Federal do Rio Grande do Norte CB, Departamento de Ecologia Campus Universitário - Lagoa N

[R-sig-phylo] Jaccard x Nestedness?

) also mixes both turnover and nestedness as the Sorensen index? Thank you in advance for any thoughts, Alexandre -- Dr. Alexandre F. Souza Professor Associado Chefe do Departamento de Ecologia Universidade Federal do Rio Grande do Norte CB, Departamento de Ecologia Campus Universitário - Lagoa