Re: [R-sig-phylo] corHMM reconstruction not estimating internal node states

2016-02-28 Thread Michael Foisy
Hi Kev, Thank you for your response! Yes -- $States was a typo, sorry! Nevertheless, unclassing the model (on my end) showed issues with the node labels (NA) and estimated $states (NaN). Jeremy Beaulieu advised me to try updating my version of corHMM -- he was spot on; I was using an old versio

Re: [R-sig-phylo] corHMM reconstruction not estimating internal node states

2016-02-28 Thread Arbuckle, Kevin
Hi Michael, When I run your code I get states for the nodes, so I'm not sure what the problem is. However, I notice in your message you tried to get the node states from $States, so I wonder if this is a typo or if this is the problem: the node reconstructions are in $states (note the lower cas