Re: [R-SIG-Mac] XML packages source compilation on macOS 10.15.7

2021-03-17 Thread Kemal Akat
Simon and Duncan, I had not had time to dig deeper into this issue but recently made the transition to “Big Sur”. With that and "$ sudo rm -rf /Library/Developer/CommandLineTools” followed by "$ xcode-select --install” the compilation is successful now. I have no idea why libxml2 should not whe

Re: [R-SIG-Mac] XML packages source compilation on macOS 10.15.7

2021-02-15 Thread Simon Urbanek
Kemal, it looks like you're completely missing the libxml2 includes on that system. XML prefers xml2-config over pkg-config so it will by default pick the system version of xml2, but you don't have the includes for that. According to your setup, they are supposed to be in /Library/Developer/Com

Re: [R-SIG-Mac] XML packages source compilation on macOS 10.15.7

2021-02-15 Thread Kemal Akat
Sorry, forgot the config.log. Also, I use Apple compilers (Xcode 12.3 at that time) and the GNU Fortran compiler 8.2 as recommended under “Mandatory tools” on https://cran.r-project.org. Now…I have a hunch here may be the root cause for my troubles as I used other compilers in the past (llvm via Ho

Re: [R-SIG-Mac] XML packages source compilation on macOS 10.15.7

2021-02-15 Thread Kemal Akat
Hi Duncan and Simon, Thanks for getting back to me. The R version I use(d) is R Under development (unstable) (2021-01-15 r79833) This was installed via the installer package downloaded from https://mac.r-project.org . It was not compiled from source. That was the

Re: [R-SIG-Mac] XML packages source compilation on macOS 10.15.7

2021-02-15 Thread Simon Urbanek
Kemal, what Duncan said, since what you provided does not include any of the information needed. In addition, you should not include SDK paths directly - SDK is used by the dev tools and does *not* include the actual libraries. So when you say /foo/bar it is actually searched inside the SDK th

Re: [R-SIG-Mac] XML packages source compilation on macOS 10.15.7

2021-02-15 Thread Duncan Temple Lang via R-SIG-Mac
Hi Kemal Can you please send the output from the entire installation attempt, and also the config.log file. Thanks Duncan On Mon, Feb 15, 2021 at 5:14 AM Kemal Akat wrote: > Hello all, > > I have to compile the XML package from source for R 4.1 (development > version) on a Mac with OS version

[R-SIG-Mac] XML packages source compilation on macOS 10.15.7

2021-02-15 Thread Kemal Akat
Hello all, I have to compile the XML package from source for R 4.1 (development version) on a Mac with OS version 10.15.7. It works well on all machines that do not come with any significant ballast on developer tools. One machine, however, that I have used for some time returns a mismatch of h