Hi Kemal
Can you please send the output from the entire installation attempt, and
also the config.log file.
Thanks
Duncan
On Mon, Feb 15, 2021 at 5:14 AM Kemal Akat <kma460...@gmail.com> wrote:
> Hello all,
>
> I have to compile the XML package from source for R 4.1 (development
> version) on a Mac with OS version 10.15.7. It works well on all machines
> that do not come with any significant ballast on developer tools. One
> machine, however, that I have used for some time returns a mismatch of
> header files and library. I looked into possible offenders and purged what
> I could (e.g. deleted Homebrew although the other machines have Homebrew
> and Miniconda installed as well) but to no avail.
>
> install.packages(“XML”) fails and install.packages("XML",
> configure.args=c("LIBXML_INCDIR=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/libxml2",
> "LIBXML_LIBDIR=/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib”))
> also fails.
>
> There are obviously differences I cannot track down so far but I am
> running out of ideas. Both machines have MacOSX10.14.sdk and
> MacOSX10.15.sdk installed with MacOSX.sdk linking to MacOSX10.15.sdk.
>
> Here is part of the log of a successful compilation, and I was hoping
> someone could point me towards a solution.
>
> libxml include directory:
> -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include
> libxml library directory:
> -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib -lxml2 -lz
> -lpthread -licucore -lm -lz -lxml2
> libxml 2: -DLIBXML2=1
>
> Compilation flags: -DLIBXML
> -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include
> -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1
> -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1
> -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1
> -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1
> -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1
> Link flags:
> -L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib -lxml2 -lz
> -lpthread -licucore -lm -lz -lxml2
>
>
> Thanks,
> Kemal
> _______________________________________________
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> R-SIG-Mac@r-project.org
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>
--
===============================
Duncan Temple Lang
Associate Dean for Graduate Programs
Professor, Department of Statistics
UC Davis
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