To whom it may concern,
I've been trying to change my e-mail address unsuccessfully via the World Wide
Web. Could you please change my e-mail address to mathilde.hag...@wur.nl?
Thank you,
Mathilde
Dr. M. (Mathilde) Hagens | Assistant Professor | Department of Soil Quality |
Wageningen Univers
This is indeed a problem with Rstudio:
I used the Rstudio 1.2.308 (development version) but the same occurred
with 1.1.419 version;
> library("rJava")
Erreur : package or namespace load failed for ‘rJava’:
.onLoad a échoué dans loadNamespace() pour 'rJava', détails :
appel : dyn.load(file, D
RStudio is not R, so you'll have ask ask their support how they pick up Java
settings. As you can see they are not taking the correct settings from R so it
may be a bug in RStudio.
Cheers,
Simon
> On Jan 31, 2018, at 2:48 PM, Marc Girondot wrote:
>
> Hi Simon,
>
> Half solution ! Thanks !
Looks like something is overriding R's ldpaths settings.
(R_JAVA_LD_LIBRARY_PATH should be exported with DYLD_FALLBACK_LIBRARY_PATH.)
Do you have any old .Renviron files lying around? Particularly in your home
directory (~)
> On Jan 31, 2018, at 2:48 PM, Marc Girondot wrote:
>
> Hi Simon,
>
Hi Simon,
Half solution ! Thanks !
I remove JAVA_HOME and when R is ran as root or non-root in terminal,
rJava package can be loaded. Great !
But in Rstudio, I have still a problem (see bellow).
Any suggestion ?
Thanks
Marc
> library(rJava)
Erreur : package or namespace load failed for ‘r
It means that you are likely setting JAVA_HOME incorrectly in your user
account. Don't set JAVA_HOME - you'll only likely break things by doing so.
Cheers,
Simon
> On Jan 31, 2018, at 10:52 AM, Marc Girondot wrote:
>
> Thanks for your help:
>
> Here are some results; First in terminal:
>
>
Thanks for your help:
Here are some results; First in terminal:
belinda:~ marcgirondot$ locate libjvm.dylib
/Applications/Xcode.app/Contents/Applications/Application
Loader.app/Contents/itms/java/lib/server/libjvm.dylib
/Library/Internet
Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/lib/serve
Seems odd that R can’t find libjvm outside of sudo.
From R, run
Sys.getenv()
and check your DYLD_LIBRARY_PATH and DYLD_FALLBACK_LIBRARY_PATH variables.
Should be ‘[..]/Home/jre/lib/server’ in there somewhere. Check those paths for
libjvm.dylib
> On Jan 31, 2018, at 8:17 AM, Marc Girondot wr
Sorry... bad news. It works only if R is ran as root. If R is ran as
non-root user:
> library(rJava)
Erreur : package or namespace load failed for ‘rJava’:
.onLoad a échoué dans loadNamespace() pour 'rJava', détails :
appel : dyn.load(file, DLLpath = DLLpath, ...)
erreur : impossible de cha
I have found a solution based on the proposition of Keith. Thanks a lot
First I have made some cleaning because I had pieces of clang in many
places.
Then with a clean version I installed
clang-4.0.0-darwin15.6-Release.tar.gz using the version in
http://r.research.att.com/libs/
Sorry, ignore the installation question, I missed the ‘brew install’ line.
Try adding a symbolic link from the brew install of libomp to /usr/local/lib.
> On Jan 31, 2018, at 5:38 AM, Keith O'Hara wrote:
>
> Apple’s LLVM doesn’t support OpenMP, which explains the second error.
>
> How did y
Apple’s LLVM doesn’t support OpenMP, which explains the second error.
How did you install clang-5.0.1? If you installed using MacPorts, then you
might need to create a symbolic link to libomp in /usr/local/lib. Check if the
following exists:
/opt/local/lib/libomp/libomp.dylib
> On Jan 31, 20
Dear Experts,
I use now r-3.5 devel as it is stable (from http://r.research.att.com ,
version (2018/01/30, r74185) ) but I have a problem with compilation of
rJava package.
In short (all the explanations are bellow):
If I use clang 4.0.0 from here: http://r.research.att.com/libs/, I get
thi
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