Re: [R-pkg-devel] Invalid UTF-8

2022-10-18 Thread peter dalgaard
key reversion as Swedish. "Brotherly love"... -pd -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Office: A 4.23 Email: pd@cbs.dk Priv: pda...@gmail.com

Re: [R-pkg-devel] [R] a question of etiquette

2020-06-02 Thread peter dalgaard
e? >>>> Is there a general policy about this matter? >>>> >>>> Adelchi Azzalini >>>> http://azzalini.stat.unipd.it/ >>>> >>>> __ >>>> r-h...@r-project.org mailing list -- To UNSUBSCRIBE and more, see &g

Re: [R-pkg-devel] note about mispelled words

2020-03-17 Thread Peter Dalgaard
ly.com/ >>> >>> R packages on CRAN: >>> CAinterprTools >>> https://cran.r-project.org/web/packages/CAinterprTools/index.html >>> >>> GmAMisc >>> https://cran.r-project.org/package=GmAMisc >>> >>> movecost >>> https://cran.r-proj

Re: [R-pkg-devel] [FORGED] Re: Help on Windows CRAN Check

2020-03-05 Thread peter dalgaard
ings like: >>> >>>if(!is.null(x) && x > 0) >>> >>> If "x" were null then the second condition would cause an error to be >>> thrown if you used "&" rather than "&&". >>> >>> I

Re: [R-pkg-devel] Need help to resolve NOTEs in auto check

2020-01-22 Thread peter dalgaard
RIPTION’ ... OK * this is package ‘ISwR’ version ‘2.0-5’ * checking CRAN incoming feasibility ... WARNING Maintainer: ‘Peter Dalgaard ’ Insufficient package version (submitted: 2.0.5, existing: 2.0.8) Days since last update: 2 The Date field is over a month old. * checking package namespace information

Re: [R-pkg-devel] CRAN submission with "possibly unsafe calls" or alternative approach?

2019-12-06 Thread peter dalgaard
Thanks, > > Rainer > > > -- > Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, > UCT), Dipl. Phys. (Germany) > > Orcid ID: 0000-0002-7490-0066 > > Department of Evolutionary Biology and Environmental Studies > University of Züric

Re: [R-pkg-devel] Fix non-ASCII characters in R packages

2019-12-02 Thread peter dalgaard
Any suggestions? > > obs. I've posted this question on SO > https://stackoverflow.com/questions/59139923/fix-non-ascii-characters-in-r-packages > > best, > > Rafael Pereira > > [[alternative HTML version deleted]] > > ____

Re: [R-pkg-devel] Building fails with 'mypackage/DESCRIPTION' does not exist

2019-09-30 Thread peter dalgaard
e HTML version deleted]] > > ______ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frede

Re: [R-pkg-devel] script translation - good practice?

2019-09-18 Thread peter dalgaard
e under this > license: > https://creativecommons.org/licenses/by/3.0/ > > Raphael > > Le 18/09/2019 à 14:11, peter dalgaard a écrit : >> Not a lawyer, but... >> >> I would expect that it depends on what license it was published under >> originally

Re: [R-pkg-devel] script translation - good practice?

2019-09-18 Thread peter dalgaard
g mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Office: A 4.23 Email: pd@cbs.dk Priv: pda...@gmail.com

Re: [R-pkg-devel] Misspelled words in DESCRIPTION

2019-08-20 Thread peter dalgaard
___ >> R-package-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-package-devel >> > > > -- > John > :wq > > [[alternative HTML version deleted]] > > __ >

Re: [R-pkg-devel] Whack-a-mole base::assign(".ptime", proc.time(), pos = "CheckExEnv")

2019-04-30 Thread peter dalgaard
_____ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)3815350

Re: [R-pkg-devel] dtrti2 error on CRAN checks

2019-04-19 Thread peter dalgaard
t; >> In short, you need to look more closely. On the Ubuntu 18.10 machine that I >> type this on, sessionInfo()'s second paragraph has >> >> Matrix products: default >> BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3 >> LAPACK: /usr/lib/x86_64-linu

Re: [R-pkg-devel] attempt to re-insert old removed package

2019-04-05 Thread peter dalgaard
edures for that > process. > > Any body who has managed this already? Helpful links appreciated, many > thanks. > > [[alternative HTML version deleted]] > > __ > R-package-devel@r-project.org mailing list > https://

Re: [R-pkg-devel] obscure syntax error

2019-03-22 Thread peter dalgaard
> } > } > else { > if(missing(data)) xt<-calculate.xtab(get(ft[1]),get(ft[2]),varnames=varnames) > else xt<-calculate.xtab(data[,ft[1]],data[,ft[2]],varnames=varnames) > } > attr(xt,"class")<-"xtab" > return(xt) > } &g

Re: [R-pkg-devel] Checking for future file timestamps - warning with worldclockapi HTTP status 403 Site Disabled

2019-03-07 Thread peter dalgaard
directory … OK >>> [...] >>> >>> >>> >>> ## Ralf Herold >>> ## mailto: ralf.her...@mailbox.org [S/MIME] >>> ## https://paediatricdata.eu/ >>> >>> __ >>> R-package-devel

Re: [R-pkg-devel] Win-builder: Author field differs from that derived from Authors@R

2019-02-06 Thread peter dalgaard
= c('con', 'cph')), person('Tilman', >>> 'Benkert', email = 't...@gmx.net', role = c('con', 'cph')), >>> person('Kasper', 'Peeters', email = 'kasper.peet...@aei.mpg.de', >>> role = c(

Re: [R-pkg-devel] RData files with identical objects in package

2019-01-14 Thread peter dalgaard
the default is not to do so.) It > should not be used for other data files needed by the package, and the > convention has grown up to use directory inst/extdata for such files. > > All best wishes > Troels > > > -Oprindelig meddelelse- > Fra: peter dalgaard > Sendt:

Re: [R-pkg-devel] RData files with identical objects in package

2019-01-13 Thread peter dalgaard
ut so far >> didn't find the clue. >> >> Seemingly it is the file with the last name that is assessed - when I rename >> first.RData to "xfile.RData" we get 100 and 1000. >> >> Now and then when running ctrl-shift-L and - B we see >> >> >> >> Atta

Re: [R-pkg-devel] Package update submission to CRAN fails on pretest

2018-12-07 Thread peter dalgaard
o. The current version of the > package is 1.1.1. Could this be the reason for the problem? > > Do you have an idea how to progress with the testing or how to locate > the errors? Any help is welcome. > > Best regards, > Wolfgang Lenhard > > > [[alternative

Re: [R-pkg-devel] Effieciency drop in do.call?

2018-11-19 Thread peter dalgaard
A classical way of encountering this is x <- rnorm(1000) do.call("plot", list(x)) A way out is do.call("plot", list(quote(x))) -pd > On 19 Nov 2018, at 22:32 , peter dalgaard wrote: > > If it was just about args evaluation, then the slowness would be

Re: [R-pkg-devel] Effieciency drop in do.call?

2018-11-19 Thread peter dalgaard
gt; __ >> R-package-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-package-devel > > > > -- > Statistics & Software Consulting > GKX Group, GKX Associates Inc. > tel: 1-877-GKX-GROUP

Re: [R-pkg-devel] Unexpected symbol when checking package examples

2018-11-11 Thread Peter Dalgaard
; > > > Jared Knowles > President, Civilytics Consulting LLC > www.jaredknowles.com > > [[alternative HTML version deleted]] > > __ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman

Re: [R-pkg-devel] R graphics 'text' package 'adj' parameter order wrong incorrect reversed?

2018-09-19 Thread peter dalgaard
s, labels = letters[tens], adj = c(1,1)) >> >> Thanks. >> >>[[alternative HTML version deleted]] >> >> __ >> R-package-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-package-d

Re: [R-pkg-devel] Replicate solaris errors

2018-08-11 Thread peter dalgaard
t;>> >>> Two questions: >>> >>> 1) What did I miss or do wrong? >>> >>> 2) Anyone found a way to replicate solaris CRAN builds to test packages? >> I >>> tried to use https://builder.r-hub.io/, but some of my package's >&g

Re: [R-pkg-devel] updating my package to fix if () condition has length > 1

2018-05-04 Thread peter dalgaard
str(method[1], 1, 1), c("b", "P"))) { > > > I know the variable "method" is a single character string, but to handle the > error checking, I now explicitly tell it to use "method[1]". -- Peter Dalgaard, Prof

Re: [R-pkg-devel] Warnings and error message in CRAN Package Check Results

2018-03-24 Thread peter dalgaard
? Aren't all the subexpressions of type "par = par" just assignments?? -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Office: A 4.23 Email: pd@cbs

Re: [R-pkg-devel] win-builder 3.3.3 libcurl error + NOTE

2018-03-24 Thread peter dalgaard
Sorry, I forgot: We don't switch until _release_ of 3.5.0, four weeks further down the line. Still, it doesn't seem worth it making much of a fuss about 3.3.3. -pd > On 24 Mar 2018, at 10:10 , peter dalgaard wrote: > > Given that R-oldrelease will become 3.4.4 when we

Re: [R-pkg-devel] win-builder 3.3.3 libcurl error + NOTE

2018-03-24 Thread peter dalgaard
n my CRAN submission > comment? > > Tyler > > [[alternative HTML version deleted]] > > __ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Peter Dalgaard, Professor, C

Re: [R-pkg-devel] [CRAN-pretest-archived] CRAN submission Rpolyhedra 0.2.2

2018-03-15 Thread peter dalgaard
t;http://imaginary.org/content/algebraic-soundscapes> | surfer-shuffle > <http://imaginary.org/program/surfer-shuffle> > > [[alternative HTML version deleted]] > > __ > R-package-devel@r-project.org

Re: [R-pkg-devel] Assignments to the Global environment

2018-01-06 Thread peter dalgaard
s ... [4s] NOTE > Found the following assignments to the global environment: > File 'TSEtools/R/getTSE.R': > assign(as.character(s), temp3, envir = as.environment(1)) > > Please let me know, how can I eliminate this problem? I didn't find out > any good information o

Re: [R-pkg-devel] Warning "Dependence on R version '3.3.3' not with patchlevel 0"

2018-01-03 Thread peter dalgaard
__ >> R-package-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-package-devel >> > > __ > R-package-devel@r-project.org mailing list > https://stat.e

Re: [R-pkg-devel] package dependencies not detected?

2017-08-16 Thread peter dalgaard
> ) > { > plot(x, ...) > do.call(graphics::legend, args) > } > ", file="R/testFun.R") > > devtools::check() # no problems - even though I only import plot, not legend > # same thing if I use graphics::legend directly (outside of do.call) > >

Re: [R-pkg-devel] -fbounds-check on develop version of Win-builder

2017-06-10 Thread peter dalgaard
I stupidly tried to solve the problem in the current version 0.3.1 of > dynamichazard on CRAN by adding this rule in Makevars.win: > dchur.o: > $(F77) $(filter-out -fbounds-check,$(ALL_FFLAGS)) -c dchur.f -o dchur.o > > This makes all my tests pass including those that uses the &

[R-pkg-devel] R 3.4.1 at end of June

2017-06-02 Thread peter dalgaard
es of other people). - Peter Dalgaard -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Office: A 4.23 Email: pd@cbs.dk Priv: pda...@gmail.com -- Peter Dalgaard, Professor, Cente

Re: [R-pkg-devel] Help package checks using valgrind

2017-05-25 Thread peter dalgaard
gestions on how to get more details on what is occurring at that > point? > > Thanks! > Merlise > From: peter dalgaard > Sent: Tuesday, May 23, 2017 6:40 PM > To: Merlise Clyde, Ph.D. > Cc: r-package-devel@r-project.org > Subject: Re: [R-pkg-devel] Help package c

Re: [R-pkg-devel] Help package checks using valgrind

2017-05-23 Thread peter dalgaard
> BLAS: /usr/local/lib64/R/lib/libRblas.so > LAPACK: /usr/local/lib64/R/lib/libRlapack.so > > > source code is at http://github.com/merliseclyde/BAS > > > > Merlise A Clyde > Professor & Chair Department of Statistical Science > Duke University > htt

[R-pkg-devel] R-3.3.2 on October 31

2016-10-05 Thread peter dalgaard
Just a quick heads-up, mostly for those who want to keep their packages up to date with respect to updates of R: We intend to have a patch release on October 31. Nickname and detailed schedule will be made available on developer.r-project.org in due course. For the R Core Team Peter Dalgaard

Re: [R-pkg-devel] R Packages Never Finish Check

2016-10-01 Thread peter dalgaard
OK >> * checking whether package 'linkedata' can be installed ... OK >> * checking installed package size ... >> >> >> >> >> >> ** >> This e-mail and any attachments thereto may contain con

Re: [R-pkg-devel] Compiler choice on CRAN (R-windows-oldrel)

2016-08-25 Thread peter dalgaard
r-package-devel/2016q3/000983.html > [2] https://cran.r-project.org/bin/windows/Rtools/ > [3] > https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Customizing-package-compilation > > [[alternative HTML version deleted]] > > ____

Re: [R-pkg-devel] Pkgs with ToS violations

2016-08-04 Thread peter dalgaard
.com | @eddelbuettel | e...@debian.org > > ______ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solb

Re: [R-pkg-devel] Recommendation on qr method export

2016-08-02 Thread Peter Dalgaard
Not strictly what you're asking, but at some point it may be important to note that the "QR" method used by lm() and friends (notably anova() and aov()) actually relies on successive orthogonalization. This does yield a QR decomposition but the reverse is not true. A generic X=QR decomposition d

Re: [R-pkg-devel] Package was removed from CRAN "despite reminders" -- but I did not receive any such messages

2016-06-01 Thread peter dalgaard
gt;>[[alternative HTML version deleted]] >> >> __ >> R-package-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-package-devel >> > > [[alternative HTML version deleted]] >

Re: [R-pkg-devel] Namespace error

2016-02-17 Thread peter dalgaard
g 3rd party maintainers' work for them.) -pd > > Gabor > >> Duncan Murdoch > [...] > > __ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Peter Dalga

Re: [R-pkg-devel] Namespace: summary of all undefined globals

2015-12-22 Thread peter dalgaard
e for > possible problems) ? Is there a way to get it from R 3.2.3 ? > > Thanks in advance, > > Patrick > > ______ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Peter Dalgaard, Professor, Center for Statistics, Copenha

Re: [R-pkg-devel] R-devel installation and libcurl

2015-10-16 Thread peter dalgaard
Jim >> >> [[alternative HTML version deleted]] >> >> __ >> R-package-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-package-devel > >

Re: [R-pkg-devel] R CMD check NOTE - Long paths in package

2015-10-13 Thread peter dalgaard
int we could decide that the more obscure Unices would have to install a recent version (with the R configuration arranging to set TAR=/usr/local/bin/gtar or somesuch). -pd > > Best, > Uwe Ligges > >> >> It now seems to have bothered at least two people and Dirk

Re: [R-pkg-devel] Using the correct R binary in configure script

2015-09-26 Thread peter dalgaard
ework/Resources (I'm not sure that it is actually supposed to work, but apparently R CMD foo executes 'foo' in the same environment as R CMD check et al.) -pd -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg

Re: [R-pkg-devel] Bug? Makevars ignores FC=mpif90

2015-08-10 Thread peter dalgaard
> Thanks again! > > PS: This is the link to my question in stack-overflow > > > > On Mon, Aug 10, 2015 at 1:41 PM peter dalgaard wrote: > > > On 10 Aug 2015, at 19:25 , Ignacio Martinez wrote: > > > > Hi, > > > > I'm learning to dev

Re: [R-pkg-devel] Bug? Makevars ignores FC=mpif90

2015-08-10 Thread peter dalgaard
___ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark Phone: (+45)38153501 Email: pd

Re: [R-pkg-devel] Setting up R-devel in Linux Mint 17.1 64-bit

2015-07-21 Thread peter dalgaard
y dependencies, etc. All of these things have their own mailing lists, full of people that know about stuff. We do not want to duplicate their content here, possibly with lesser competence. Plus, it clogs up the archives of _this_ list. -pd -- Peter Dalgaard, Professor, Center for Statistics

Re: [R-pkg-devel] Setting up R-devel in Linux Mint 17.1 64-bit

2015-07-20 Thread peter dalgaard
-lblas -lgfortran -lm -lquadmath -lreadline > -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n > /usr/bin/ld: ../appl/dchdc.o: relocation R_X86_64_32 against `.rodata' > can not be used when making a shared object; recompile with -fPIC > ../appl/dchdc.o: error adding symbols: Bad value > collect2: error: ld returne

Re: [R-pkg-devel] "invalid 'envir' argument" note from R-devel

2015-07-14 Thread peter dalgaard
Error while checking: invalid 'envir' argument >> foo: Error while checking: invalid 'envir' argument >> >> The envir argument to data() defaults to .GlobaEnv . >> >> I hope this helps, >> John >> >>> -Original Message

Re: [R-pkg-devel] "invalid 'envir' argument" note from R-devel

2015-07-13 Thread peter dalgaard
(dsname) > if (dsnameValue == "") dsnameValue <- datasetName > if (length(dsnameValue) == 0) Message(gettextRcmdr("No data > set selected."), type="warning") > else if (is.null(package)) doItAndPrint(paste(&#

Re: [R-pkg-devel] NOTE: Error while checking: invalid 'envir'-argument

2015-07-09 Thread peter dalgaard
during R CMD check, possibly via one of the static code analysis checks. So what you really should do is write a package with the construction inside one of its functions or help files, and then try R CMD check --as-cran on it. I tried a simpler way: > library(codetools) > foo <- func

Re: [R-pkg-devel] NOTE: Error while checking: invalid 'envir'-argument

2015-07-09 Thread peter dalgaard
; > > [[alternative HTML version deleted]] > > __ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Peter Dalgaard, Professor, Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000 Frederiksberg, Denmark