Fedora 40 comes with gcc 14.1.x. But I would first try to use the
`-Wformat-truncation=` flag with the compiler you have, it is possible
that you don't need gcc 14.1. If you do, then the `fedora:40`
container should be good.
Gabor
On Fri, May 24, 2024 at 9:02 PM Brad Eck wrote:
>
> Dear List -
>
R-hub v2 has UBSAN testing, the clang-asan image also has UBSAN. [1]
With the glitch that UBSAN errors do not fail the build because of a bug [2],
so you'll need to look at the results even if the build has passed.
Gabor
[1] https://r-hub.github.io/containers/
[2] https://github.com/r-hub/action
The lines
```
* checking examples with --run-donttest ...
Error: The operation was canceled.
```
and the 6 hours running time means that your build gets stuck while
running the examples, and then cancelled after 6 hours, that's the
time limit for a build.
This might or might not be specific for Gi
The rhub package should be able to reproduce that, see
https://github.com/r-hub/rhub#readme
Or you can use the clang-asan container directly:
https://r-hub.github.io/containers/
Gabor
On Mon, May 13, 2024 at 12:31 AM Kaifeng Lu wrote:
>
> Dear friends,
>
> I am developing an R package built wit
You might be able to reproduce it with the clang17 container here:
https://r-hub.github.io/containers/
You can either run it directly or with the rhub2 package:
https://github.com/r-hub/rhub2#readme
Gabor
On Wed, Sep 27, 2023 at 8:29 PM Reed A. Cartwright
wrote:
>
> My package, RBedrock, is now
Seems like you are on macOS. You need to install XCode or the Command
Line Tools to be able to compile packages with C/C++/Fortran code.
Gabor
On Mon, Sep 25, 2023 at 7:02 PM William Revelle wrote:
>
> Dear friends,
> I am trying to release a new update to psych and psychTools and am having
> p
Yeah, I think both `R_NO_REMAP` and rearranging the includes are good
solutions, personally I would do both.
There is a container at https://r-hub.github.io/containers/ if you
want to make sure that you fixed everything:
docker run -ti ghcr.io/r-hub/containers/clang17 bash
Or, you can try the new
Seems like you are on R 4.2.x, so you could try this one:
https://github.com/R-macos/gcc-darwin-arm64/releases
Gabor
On Tue, May 16, 2023 at 7:16 PM Jarrett Phillips
wrote:
>
> Installing from the URL you provide, as well as doing R CMD build HACSim as
> suggested by @JeffNewmiller fails.
>
> Wh
On Thu, Nov 25, 2021 at 11:49 AM Ivan Krylov wrote:
>
> On Wed, 24 Nov 2021 16:37:44 + (UTC)
> Nathan Green via R-package-devel wrote:
>
> > An irrecoverable exception occurred. R is aborting now ...
>
> It seems that some of your dependencies which use compiled code
> manage to crash the R p
You probably (accidentally?) put some large object into your package,
e.g. a non-function object. But it is hard to say more without seeing
the actual code
Gabor
On Fri, Oct 29, 2021 at 10:07 PM Mosqueira Sanchez, Iago
wrote:
>
>
> I am getting warnings in some packages about the size of the
On Sat, Oct 9, 2021 at 8:52 AM Ivan Krylov wrote:
[...]
> >* pthread or openmp ? I am particularly concerned about
> > interaction with other packages. I have seen that using pthread and
> > openmp libraries simultaneously can result in incorrectly pinned
> > threads.
>
> pthreads-based code c
Hi Ben,
According to https://www.stats.ox.ac.uk/pub/bdr/Rconfig/r-patched-solaris-x86
CRAN's Solaris is also 32 bit.
But maybe I am missing something?
You can download a Solaris VM (for Virtualbox or VMware) from
https://files.r-hub.io/solaris/
It has both 32 bit and 64 bit R (with gcc) and ODS R
I think they are this:
* checking CRAN incoming feasibility ... NOTE
...
and this:
* checking examples ... [76s/77s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ordPens-package 54.112 0.044 54.158
ordPCA 18.377 0.004 18.382
G.
On Sat, Aug 7, 2021 at 1:32 AM Timothy Keitt wrote:
>
> Snarky answers aside, it's still a valid question whether it's not just
> cleaner in simple cases to run commands from the Makevars file as described
> in the extensions doc. Of course there's no particularly useful examples
> there and searc
On Sat, Jul 17, 2021 at 2:21 AM wrote:
>
> Maciej:
>
> There are other packages that query the CRAN site (cranlogs, etc.). So it
> seems the queries/fetches are generally allowed. I can only find a couple
> relevant mentions in the CRAN policies:
[...]
For the record, the cranlogs package does
I think the Bioconductor error on R-hub is a red herring. The error
message is printed, but the actual error is ignored. So this is really
only an issue if you do need a Bioconductor package for the check.
I think the issue might be that for R-devel CRAN binaries are x64
only, but R CMD INSTALL an
.
On Thu, Jun 24, 2021 at 11:32 PM Duncan Murdoch
wrote:
>
> On 24/06/2021 5:22 p.m., Gábor Csárdi wrote:
> > On Thu, Jun 24, 2021 at 10:31 PM Duncan Murdoch
> > wrote:
> > [...]
> >> I'm working in RStudio on a Mac, in case that makes any difference.
> >
On Thu, Jun 24, 2021 at 10:31 PM Duncan Murdoch
wrote:
[...]
> I'm working in RStudio on a Mac, in case that makes any difference.
Yes, RStudio probably does its own thing in "Install and restart". The
pre-clean of course removes the object files from the package src/
directory, so the next load_
On Thu, Jun 24, 2021 at 8:55 PM Duncan Murdoch wrote:
[...]
> A disadvantage of the devtools method is that a regular build after
> load_all() seems to do a full 75 sec build: load_all caches things for
> itself, but doesn't put them in the same place as a regular build, so
> make doesn't see the
On Wed, Jun 2, 2021 at 1:08 PM Duncan Murdoch wrote:
[...]
> search. It would be nice to know if there's an automatic way to answer
> the question
>
> "Why does package xxx appear to require yyy?"
One quick way with the dev version of pak:
install.packages("pak", repos = "https://r-lib.github.i
n a manuscript for publication.
>
> I don't export any objects named 'col_ed' so I am quite perplexed by this
> error message.
>
> I'd appreciate any advice!
>
> Danielle
>
> On Thu, Apr 29, 2021 at 11:42 AM Gábor Csárdi wrote:
>>
>> If you
If you could share a reproducible example with us, and/or you could
show the full output, then we could probably help you better.
Gabor
On Thu, Apr 29, 2021 at 6:29 PM Danielle Maeser wrote:
>
> Hi Duncan,
>
> I really appreciate your response. Unfortunately, I am still receiving the
> error bel
On Thu, Apr 22, 2021 at 11:19 PM Kevin R. Coombes
wrote:
[...]
> Instead, the vignette says you should
> importFrom("rlang", ".data")
> in your NAMESPACE, and write
> ggplot(myData, aes(x = .data$myX, y = .data$myY))
>
> And now my dinosaur question: That looks like using one non-standard
remotes::install_github() is a function aimed at developers that need
the unreleased version of a package for testing or other dev purposes.
In these cases you don't usually need the vignettes. hence the
default.
Gabor
On Wed, Apr 14, 2021 at 8:17 PM Chris Evans wrote:
>
> Oh no, how embarrassin
remotes::install_github() does not build the vignettes by default, you
can use the build_opts argument to change this.
Gabor
On Wed, Apr 14, 2021 at 6:53 PM Chris Evans wrote:
>
> As ever, my package is https://github.com/cpsyctc/CECPfuns and I am building
> withing Rstudio 1.4.1103
>
> I am ai
I mean, here:
https://github.com/r-hub/sysreqsdb/commit/e4dd4d6c240407317abb67e156d99ef738a7e73c
https://github.com/r-hub/sysreqsdb/commit/88718aad52df59b7e76c2db563991558a168b05e
G.
On Thu, Apr 8, 2021 at 6:12 PM Gábor Csárdi wrote:
>
> Should be fi
appreciate the work going into RHub - the reason I am having this
> > problem is I use RHub to check my submissions. I just keep failing in my
> > CRAN submissions on Debian while passing on Windows and Mac, sort of
> > frustrating.
> >
> > -Roy
> >
> >
Hi,
Which one is your package? Which spatial package fails? Can you link
to an issue in the issue tracker, if there is one?
As for an alternative, you can run a Docker container. This works on
Linux, Windows and macOS, on any recent enough machine. You can run
one of the R-hub containers, e.g.
ht
On Mon, Mar 8, 2021 at 5:45 PM Thierry Onkelinx
wrote:
> Yes, This was the problem. The recent version of lattice was in my home
> folder ~/R/x86_64-pc-linux-gnu-library/4.0 (first element of .libPaths()).
> An older version of lattice was in /usr/lib/R/library (last element of
> .libPaths()).
>
Hi,
If you think this is a bug in rcmdcheck, then please report an issue
here: https://github.com/r-lib/rcmdcheck/issues
My guess is that you have another version of lattice in another
library, and that version is used with `--as-cran`.
Gabor
On Mon, Mar 8, 2021 at 5:18 PM Thierry Onkelinx
wro
On Sun, Feb 21, 2021 at 3:47 PM Iñaki Ucar wrote:
>
> Hi,
>
> Let's say that pkgA uses pkgB::function1. Then, version 2 of pkgB
> removes function1 and exports function2 for the same functionality. So
> pkgA does something along these lines:
>
> if (utils::packageVersion("pkgB") < 2) {
> pkgB::f
On Sun, Feb 21, 2021 at 6:05 PM Duncan Murdoch wrote:
>
> On 21/02/2021 9:47 a.m., Iñaki Ucar wrote:
> > Hi,
> >
> > Let's say that pkgA uses pkgB::function1. Then, version 2 of pkgB
> > removes function1 and exports function2 for the same functionality. So
> > pkgA does something along these line
well.
You can also get a Solaris VM, to make it easier to debug the issue on
Solaris: https://github.com/r-hub/solarischeck/tree/master/packer Let
me know if you don't want to build the VM yourself, and I can give you
access to one.
Gabor
On Thu, Feb 18, 2021 at 10:54 AM Gábor Csárdi wrote
FWIW this code does not give me any warnings or errors on Solaris and
R 4.0.4 and the current CRAN version of metapack.
Gabor
On Thu, Feb 18, 2021 at 1:54 AM Daeyoung Lim wrote:
>
> Hello,
>
> I have a package on CRAN called 'metapack' and received a message from
> Professor Ripley that the erro
You can use this Docker container:
https://hub.docker.com/repository/docker/rhub/debian-gcc-devel-lto
It is somewhat old, but chances are that it will reproduce the LTO
issues. I'll update it in a minute, anyway.
Gabor
On Wed, Feb 17, 2021 at 9:33 PM Ivan Krylov wrote:
>
> On Wed, 17 Feb 2021 2
I suspect that this is an issue with the CRAN Windows machine, not
with your package.
If you want to work around it in the incoming checks, you can remove
the URL. Maybe it is enough to remove the `https://` from the
beginning, but I am not sure.
Gabor
On Wed, Feb 17, 2021 at 4:33 PM Vincent van
On Sun, Jan 31, 2021 at 6:52 PM Duncan Murdoch wrote:
>
> On 31/01/2021 12:35 p.m., Duncan Murdoch wrote:
> > On 31/01/2021 10:57 a.m., Gábor Csárdi wrote:
> >> Do you actually experience any problems, if you don't treat this case
> >> specially?
> >
>
Do you actually experience any problems, if you don't treat this case specially?
AFAIR, in most cases this is not a problem in practice. remotes might
install the CRAN version of rgl as the dependency of alphashape3d, but
`R CMD check` will install and use the local copy of the rgl package
for the
Will,
I can help you get a Solaris VM, for VirtualBox or VMware, let me know
in private if you need one.
OTOH that crash is coming from a requireNamespace("clustermq", quietly
= TRUE) call, so it does not seem like it is your fault.
You could also try to reproduce this with `rhub::check()` and o
You can try to add some `setwd()` calls at the beginning of each step
that calls some R command.
This is not great of course, much of the GitHub-R tooling just assumes
that a repo contains a single package, at the root of the repo.
Converting your repos to this structure is painful, but can be sti
On Wed, Dec 16, 2020 at 8:39 PM Henrik Bengtsson
wrote:
>
> BTW, 'backports' provides a backport for tools::R_user_dir() also for
> R (< 4.0.0), so an alternative solution in this case is:
>
> Imports: backports
>
> and
>
> importFrom(backports, R_user_dir)
>
> The 'backports' package takes the sa
The best place for ggplot2 related questions is https://community.rstudio.com/
Make sure you use the ggplot2 tag for your question.
Gabor
On Tue, Dec 8, 2020 at 9:25 AM neonira Arinoem wrote:
>
> Is it possible to compose a string to be used as axis title in ggplot2,
> with the main part being
Hi,
on R-hub's Linux builders it is automatically installed if needed,
except that it wasn't on Fedora, because of a bug. Please try again,
and if it does not work report an issue on R-hub.
On Travis, you'll need to install the required packages yourself in
the `.travis.yml` file.
On CRAN's mach
Why not submit a bug report at the devtools repository?
❯ packageDescription("devtools")$BugReports
[1] "https://github.com/r-lib/devtools/issues";
Gabor
On Thu, Nov 26, 2020 at 7:50 PM Spencer Graves
wrote:
>
> Hi folks,
>
>
> devtools::release() gave the following errors:
>
>
> ...
I am not sure if you can solve this without a configure file, which
can be a simple shell script. Here is an example, that detects a bunch
of OSes and then creates an OS-dependent Makevars file:
https://github.com/r-lib/ps/blob/master/configure
You'll probably also need configure.win if you have c
You probably import functions from shiny. Don't do that, refer to them
with the `::` operator instead.
Gabor
On Sat, Nov 14, 2020 at 6:12 PM Kamil Stachowski
wrote:
>
> I wrote a package that contains a graphical interface written with packages
> "shiny" and "shinyjqui". My package can also be u
On Fri, Nov 13, 2020 at 9:02 PM Duncan Murdoch wrote:
[...]
> Things may have changed since Henrik and I wrote the code, but his
> description matches my understanding as well (and I think he's
> contributed more recently than I have).
>
> The way non-Sweave vignettes work is that some packages re
On Fri, Nov 13, 2020 at 6:10 PM Henrik Bengtsson
wrote:
>
> I'm quite sure you want to use the following:
>
> Suggests: knitr, rmarkdown, formatR
> VignetteBuilder: knitr
So this means that WRE is wrong? It says:
"Note that if, for example, a vignette has engine ‘knitr::rmarkdown’,
then knitr pr
needed in the build
> config as a separate entity?
>
> e.g:
>
> Suggests: knitr, rmarkdown
> VignetteBuilder: knitr, formatR
>
> or
>
> Suggests: knitr, rmarkdown
> VignetteBuilder: knitr, rmarkdown, formatR
>
> Thank you.
>
> J Park
>
> On 11/13/2
I think you need to Suggest the formatR package, because your
vignettes use it. From 'Writing R extensions':
"Many packages using knitr also need the package formatR which it
suggests and so the user package needs to do so too and include this
in ‘VignetteBuilder’."
Gabor
On Fri, Nov 13, 2020 at
On Tue, Oct 20, 2020 at 10:07 PM Ben Bolker wrote:
>
>
>
> On 10/20/20 4:51 PM, Gábor Csárdi wrote:
> > On Tue, Oct 20, 2020 at 9:45 PM Ben Bolker wrote:
> > [...]
> >> if (testthat::skip_on_cran())
> >>
> >> all seem like reasonable sol
On Tue, Oct 20, 2020 at 9:45 PM Ben Bolker wrote:
[...]
>if (testthat::skip_on_cran())
>
> all seem like reasonable solutions.
I don't think you can use `testthat::skip_on_cran()` for this, it does
not return a logical flag:
❯ isTRUE(testthat::skip_on_cran())
Error: Reason: On CRAN
It only
Make sure you quit from all R sessions before you reinstall rJava, and
also that it is not loaded in the current session.
You can also run tools::checkMD5sums("rJava") to check the MD5 sums.
Gabor
On Tue, Oct 13, 2020 at 4:55 PM Helmut Schütz wrote:
>
> Dear all,
>
> in one of my packages I imp
It seems that Debian testing has a new version of libxml2, or maybe
the ICU is newer, and the xml package does not compile with this.
I am afraid that xml2 needs some fixes to solve this. It might be
enough to require C++11 support. If you don't want to wait for the
xml2 maintainer, then you can f
You can define the special dependency of the revdep-checked package in
the `Remotes` field. More info:
https://cran.rstudio.com/web/packages/remotes/vignettes/dependencies.html
E.g. if you are revdep-checking package PKG, then you can add
something like this in the DESCRIPTION file of PKG:
Remotes
o package users
> > though
> > > > – that's why they are in the package. So I would rather not "hide"
> > them in
> > > > a local environment. This is fundamentally a data package, so access to
> > > > this data is the primar
s, because they do not contain escaped characters:
fixed <- stringi::stri_unescape_unicode(pali_alphabet)
identical(pali_alphabet, fixed)
#> TRUE
Gabor
> Is there any other solution?
>
> Dan
>
> .
> --
> Dan Zigmond
> d...@shmonk.co
Store the cached data in an environment within the package:
pali_data <- new.env(parent = emptyenv())
pali_string_fix <- function() {
pali_data$alphabet <-
stringi::stri_unescape_unicode(pali_alphabet)
...
}
Gabor
On Thu, Sep 3, 2020 at 9:33 PM Dan Zigmond wrote:
>
> Hi, all. I am devel
`return()` is a function in R, so `return` does nothing. You probably
want `return()`.
Here:
https://github.com/Anirban166/testComplexity/blob/c991c31e5250bcaf804c3ad781fbc126c6a17e57/R/asymptoticMemoryUsage.R#L22
https://github.com/Anirban166/testComplexity/blob/master/R/asymptoticTimings.R#L22
On Wed, Sep 2, 2020 at 11:11 PM Dirk Eddelbuettel wrote:
>
>
> On 2 September 2020 at 23:59, Emmanuel Blondel (GMAIL) wrote:
[...]
> | Your advice in order to solve that would be much appreciated,
>
> Life, as they say, "is too short" so you could just comment-out the test.
Indeed, it is probably
Is this reproducible on R-hub? Do you see it with the other R-devel
containers as well?
Some things to try:
Try running address sanitizer on your package to see if it can find
any memory errors. You can do this on R-hub as well, if you cannot do
it on your machine.
Try downloading the https://hu
Hi, If you mean remotes::install_git(), and you think this is a bug in
remotes, then please open an issue in the remotes issue tracker:
https://github.com/r-lib/remotes/issues
Thanks,
Gabor
On Sat, Aug 22, 2020 at 9:08 PM Sameh M. Abdulah
wrote:
>
>
> I am using install_git to download my packa
>From https://cran.r-project.org/doc/manuals/R-exts.html:
> The script is run in a separate R environment containing the following
variables: R_PACKAGE_NAME (the name of the package), R_PACKAGE_SOURCE (the
path to the source directory of the package), R_PACKAGE_DIR (the path of
the target installa
❯ install.packages("ps", repos = "https://cran.r-project.org";)
Installing package into ‘/Users/gaborcsardi/Library/R/4.0/library’
(as ‘lib’ is unspecified)
trying URL 'https://cran.r-project.org/bin/macosx/contrib/4.0/ps_1.3.4.tgz'
Error in download.file(url, destfile, method, mode = "wb", ...) :
On Fri, Aug 7, 2020 at 3:51 PM Helmut Schütz wrote:
>
> Hi Gábor,
>
> Gábor Csárdi wrote on 2020-08-07 16:46:
> > If you want to link to a package in the documentation, you'll have to
> > add it to Suggests.
>
> THX, will do. Is this documented somewhere
If you want to link to a package in the documentation, you'll have to
add it to Suggests.
Gabor
On Fri, Aug 7, 2020 at 3:45 PM Helmut Schütz wrote:
>
> Dear all,
>
> I'm struggling to understand this NOTE in
> r-devel-linux-x86_64-fedora-clang (only)
> https://cran.r-project.org/web/checks/check
On Thu, Jul 23, 2020 at 10:25 PM Gábor Csárdi wrote:
>
> On Thu, Jul 23, 2020 at 9:58 PM Duncan Murdoch
> wrote:
> >
> > On 23/07/2020 4:14 p.m., b...@denney.ws wrote:
[...]
> Bill, please report a roxygen2 issue at
> https://github.com/r-lib/roxygen2/issues a
On Thu, Jul 23, 2020 at 9:58 PM Duncan Murdoch wrote:
>
> On 23/07/2020 4:14 p.m., b...@denney.ws wrote:
[...]
>
> If you change the source to include the explicit characters (i.e. use
> pattern = c("μ", "µ") instead of pattern=c("\u03bc", "\u00b5")), does
> that help?
>
> It may cause other issue
Hi, this is because data.table is not available as a binary package
for R-devel, on CRAN. You can tell R to build it from source like
this:
rhub::check(
platform="windows-x86_64-devel",
env_vars=c(R_COMPILE_AND_INSTALL_PACKAGES = "always")
)
Btw. please report R-ghub errors in the issue track
HI,
here is an example from a package that was accepted relatively recently:
https://github.com/r-lib/presser/blob/master/DESCRIPTION#L8-L11
Gabor
On Tue, Jul 7, 2020 at 6:30 PM git demont wrote:
>
> Hi all,
>
> Sorry for asking again, but I got absolutely no advice on how to
> correctly refer
file is compiled, some aux files are generated. So, I think
> that CRAN may not delete aux files properly.
>
> Thanks,
> CP
>
>
>
> On Sat, Jul 4, 2020 at 9:48 PM Gábor Csárdi wrote:
>>
>> Most likely this is because you start a web browser in your examples
>>
Most likely this is because you start a web browser in your examples
or tests. Try to find where that happens, and don't run it that
example or test case on CRAN.
Gabor
On Sat, Jul 4, 2020 at 1:46 PM Applied Statistics Laboratory
wrote:
>
> Dear All,
>
> I got a NOTE from CRAN:
>
>
>
>
>
>
>
> *
d check
> again.
>
> Best
>
> Jens
>
>
>
> >
> > Duncan Murdoch
> >
> > >
> > > Best regards
> > >
> > > Jens
> > >
> > >
> > >
> > >
> > > On 16.06.20 22:31, Gábor Csárdi wr
ose issues locally?
> If it is tested during cran submission, then seems reasonable to be enabled
> just by --as-cran switch. Is it?
> Thanks
>
> On Wed 17 Jun, 2020, 12:32 AM Wayne Oldford, wrote:
>>
>> Thank you!
>>
>> -Original Message-
>>
tion 'Cross-references' in the 'Writing R Extensions' manual.
>
> although clone.ff is in clone.ff.rd as confirmed by
>
> > help("clone.ff","ff")[[1]]
> [1] "/home/mypc/R/x86_64-pc-linux-gnu-library/4.0/ff/help/clone.ff"
>
>
subtlety in WRE or that the peculiar
> circumstance
> where the package, the topic, and the file name are all identical (sp) is
> some weird boundary case.
>
> Without further advice, I think I am just going to remove the link to "sp".
> It really is just a courtesy link
On Mon, Jun 15, 2020 at 5:30 PM Duncan Murdoch wrote:
>
> On 15/06/2020 12:05 p.m., Martin Maechler wrote:
> >> Duncan Murdoch on Sun, 14 Jun 2020 07:28:03 -0400 writes:
> >
> > > I agree with almost everything you wrote, except one thing: this
> > isn't
> > > newly enforced, it
On Sun, Jun 14, 2020 at 10:44 AM Duncan Murdoch
wrote:
[...]
>
> I think the argument was that static builds of the help pages would have
> trouble resolving the links. With the current system, you can build a
> help page that links to a page in package foo even if package foo is not
> installed
On Sat, Jun 13, 2020 at 8:10 PM Duncan Murdoch wrote:
>
> On 13/06/2020 1:17 p.m., Zhian Kamvar wrote:
[...]
> > Is this a new policy?
Zhian, it seems that some of the problematic links are created by
roxygen2. You can fix these using this PR:
https://github.com/r-lib/roxygen2/pull/1109
You can i
On Mon, Jun 8, 2020 at 3:58 PM Uwe Ligges
wrote:
[...]
> Nor do I how they can find out, as our idea is that CRAN cannot be
> special cased.
> If you want to run additional tests, you can execute them if some env
> var is set that you define on machines where you want to run the
> additional tests
Hi, you can use the remotes package (that devtools itself uses under
the hood), and set the R_REMOTES_STANDALONE="true" environment
variable. Then remotes will not use any packages to perform the
downloads and the installations. See more here:
https://github.com/r-lib/remotes#standalone-mode
Gabor
Seems like your tests did not finish:
https://win-builder.r-project.org/SFSFeP44df58/examples_and_tests/tests_x64/testthat.Rout
Either they take too long, or they froze. You can use a different
testthat reporter, to see which one is stuck, e.g. like this:
https://github.com/cran/desc/blob/3e52b492
You export these S4 classes from your package:
https://github.com/cran/sizeMat/blob/c4d257a9108cde3ddb6e8eb2072cd567ae85b5c8/NAMESPACE#L13-L15
But these are not actually S4 classes, AFAICT. Remove the
`@exportClass` tags here:
https://github.com/cran/sizeMat/blob/c4d257a9108cde3ddb6e8eb2072cd567ae
The reason is that CRAN does not have an R-devel binary for
data.table, and because of this install.packages() decides not to
install it. Here is a workaround:
https://github.com/r-hub/rhub/issues/367#issuecomment-621757715
Gabor
On Fri, May 15, 2020 at 10:50 PM Max Turgeon wrote:
>
> Hi Farshad
You don't need to move the files around, though, just use a more
verbose testthat reporter, e.g. in testthat.R use
test_check("PAutilities", reporter = "summary")
and then at least you'll know where it crashes. But to fix this,
you'll probably need to debug it locally. You can do that in Docker i
Apparently, this is not a warning, but the package itself is printing
it as a startup message:
https://github.com/cran/PAutilities/blob/ada73d8d44177c12867cc385cdca0054885ddae3/R/zzz.R#L5
Gabor
On Fri, May 15, 2020 at 2:30 AM Gábor Csárdi wrote:
>
> It is unlikely that this is an R-hub
It is unlikely that this is an R-hub issue because the first link is
CRAN's machine, and the same error happens there.
I can reproduce it on macOS:
git clone https://github.com/paulhibbing/PAutilities
R CMD INSTALL PAutilities
R -q -e 'packageDescription("PAutilities")$Built'
#> > packageDescrip
On Thu, May 14, 2020 at 10:27 AM Duncan Murdoch
wrote:
>
> On 14/05/2020 3:30 a.m., Georgi Boshnakov wrote:
> > The issue is not with Rstudio per se but that in devtools' development mode
> > help() is modified to show the Rd files in the source directory, as one
> > would expect, but doesn't l
Hi Jan,
this is the only example that I could find:
https://github.com/cran/regRSM/blob/master/DESCRIPTION#L13
I.e. you can have an 'Archs' field in DESCRIPTION, and apparently you
can set that to 'i386' or 'x64' or both.
I don't know what OSes support this field, and this package hasn't
been u
Yeah, this is a bug in whoami I think. It has a tryCatch() but it does
not suppress the error message from system().
Gabor
On Tue, Apr 28, 2020 at 2:35 PM wrote:
>
> Dear Uwe,
> thanks for your reply.
> But wouldn't checking for the SystemRequirements be the dependencies' jobs?
> Looking at `who
Just realized that nobody replied to this. So this seems to be a bug
in `R CMD check --as-cran`, it does not ignore the arch specific
examples and tests directories and files. It happens as well if you
run your check on a local windows, not just on R-hub.
Should I open a bug for this?
There is an
Hi,
which R version was this? Can you point to a build log?
qpdf is definitely installed on R-hub's Windows machines, and it is
even on the PATH. Maybe the new toolchain did not find it, I have
copied it to a better place now, please try again.
Best,
Gabor
On Wed, Apr 22, 2020 at 5:44 PM Paul S
Hi, please reports R-hub issues at https://github.com/r-hub/rhub/issues
It takes a bit longer to get started when there R-hub is busy. You can
always interrupt the display with CTRL+C / ESC, and then query the
results later:
❯ rhub::get_check("factorial2x2_0.2.0.tar.gz-6c92f626dae242f7b915c43bbf1
You can add the ... argument to chop.default(), and then check that
length(list(...)) is zero.
Also, you might be interested in the ellipsis package.
Gabor
On Sun, Mar 8, 2020 at 10:56 AM David Hugh-Jones
wrote:
>
> Hi all,
>
> My package defines the following method and generic:
>
> chop <- fu
Thanks for the great walk-through!
For reference, if you want to know more about R-hub, this is the
documentation: https://docs.r-hub.io/
Best,
Gabor
On Fri, Mar 6, 2020 at 4:22 AM Rolf Turner wrote:
>
>
> Recently I complained about the fact that it was taking forever for
> packages to come ba
to exclude the files
> > from copying.
> >
> > Any suggestions?
> >
> >
> >> On 11 Feb 2020, at 10:20, Rainer M Krug wrote:
> >>
> >>
> >>
> >>> On 11 Feb 2020, at 09:54, Gábor Csárdi wrote:
> >>>
> >&
On Tue, Feb 11, 2020 at 8:52 AM Rainer M Krug wrote:
> On 11 Feb 2020, at 09:42, Gábor Csárdi wrote:
> On Tue, Feb 11, 2020 at 8:38 AM Rainer M Krug wrote:
> On 10 Feb 2020, at 17:58, Gábor Csárdi wrote:
>
> Maybe you have large, ignored files in the package directory? R first
&
On Tue, Feb 11, 2020 at 8:38 AM Rainer M Krug wrote:
>
>
>
> On 10 Feb 2020, at 17:58, Gábor Csárdi wrote:
>
> Maybe you have large, ignored files in the package directory? R first
> creates a copy of the whole directory and only applies `.Rbuildignore`
> after that.
&g
Maybe you have large, ignored files in the package directory? R first
creates a copy of the whole directory and only applies `.Rbuildignore`
after that.
Gabor
On Mon, Feb 10, 2020 at 4:54 PM Hong Ooi via R-package-devel
wrote:
>
> Actually, cancel that: it finished successfully, but took 3 minut
On Mon, Feb 10, 2020 at 8:24 AM Spencer Graves
wrote:
[...]
> 1. What does the "E: 1" for "gamclass" mean? It sounds
> like an error to me, but that contradicts the final message,
> "OK: 16, BROKEN: 0".
✓ gamclass 0.58 ── E: 1 | W: 0 | N: 0
means t
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