[R-pkg-devel] pairwiseAlignment

2021-06-16 Thread csmatyi
Hello, I am trying to align two sequences, in DNAString format using the R command pairwiseAlignment. I keep getting this error: pairwiseAlignment(si,sj) Error in .Call2("XStringSet_align_pairwiseAlignment", pattern, subject, : max(nchar(pattern) * nchar(subject)) is too big (must be <= 21474

Re: [R-pkg-devel] pairwiseAlignment

2021-06-16 Thread Ben Bolker
I'm not sure this is the right venue for your question (the mailing list is for package *development*). You might try opening an issue at the package bug-report site: https://github.com/Bioconductor/Biostrings/issues or asking on https://www.biostars.org/ forum (where there are a lot of b

Re: [R-pkg-devel] Win-builder R-devel doesn't appear to be running examples

2021-06-16 Thread Kai Aragaki
Thank you both. My concern then is with the lack of output in the examples and tests directory - where before there was (for each arch) a pdf output of an image generated by an example (the output of the example was a ggplot) as well as the timings for each example, the directory for r-devel is

Re: [R-pkg-devel] Win-builder R-devel doesn't appear to be running examples

2021-06-16 Thread Uwe Ligges
Reason is that we currently plan not to support 32-bit Windows as of R-4.2.0, i.e. we stopped to build and check for 32-bit Windows in R-devel. Best, Uwe Ligges Am 16.06.2021 um 13:31 schrieb Duncan Murdoch: On 15/06/2021 5:29 p.m., Kai Aragaki wrote: Hello all - I've been testing my packag

Re: [R-pkg-devel] Win-builder R-devel doesn't appear to be running examples

2021-06-16 Thread Duncan Murdoch
On 15/06/2021 5:29 p.m., Kai Aragaki wrote: Hello all - I've been testing my package using win-builder, both R-current and R-devel. Both run with no notes, warnings, or errors aside for it being a new submission and for false-positive spelling errors. However, for R-devel, the build log does

[R-pkg-devel] Win-builder R-devel doesn't appear to be running examples

2021-06-16 Thread Kai Aragaki
Hello all - I've been testing my package using win-builder, both R-current and R-devel. Both run with no notes, warnings, or errors aside for it being a new submission and for false-positive spelling errors. However, for R-devel, the build log does not show * loading checks for arch 'i386' an