I'm not sure this is the right venue for your question (the mailing
list is for package *development*). You might try opening an issue at
the package bug-report site:
https://github.com/Bioconductor/Biostrings/issues
or asking on https://www.biostars.org/ forum (where there are a lot of
bioinformatics people)
You may be asked to provide a reproducible example (e.g. by simulation
or random generation ...)
cheers
Ben Bolker
On 6/16/21 9:14 PM, csmatyi wrote:
Hello,
I am trying to align two sequences, in DNAString format using the R command
pairwiseAlignment.
I keep getting this error:
pairwiseAlignment(si,sj)
Error in .Call2("XStringSet_align_pairwiseAlignment", pattern, subject, :
max(nchar(pattern) * nchar(subject)) is too big (must be <= 2147483647)
The 2 DNAstrings are si and sj, and are 108,007 bp and 120,698 bp long,
respectively.
Can someone help me? Are the sequences too long perchance?
Thanks, Matthew
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