Re: [R] nested, unbalanced anova

2013-01-06 Thread peter dalgaard
On Jan 6, 2013, at 04:00 , Pfeiffer, Steven wrote: > Hello, > For an experiment, I selected plots of land within a forest either with > honeysuckle or without honeysuckle. Thus, my main factor is fixed, with 2 > levels: "honeysuckle present"(n=11) and "honeysuckle absent"(n=8). > > Within each

Re: [R] nested, unbalanced anova

2013-01-06 Thread Spencer Graves
On 1/6/2013 12:45 AM, peter dalgaard wrote: On Jan 6, 2013, at 04:00 , Pfeiffer, Steven wrote: Hello, For an experiment, I selected plots of land within a forest either with honeysuckle or without honeysuckle. Thus, my main factor is fixed, with 2 levels: "honeysuckle present"(n=11) and "honey

Re: [R] Iterative loop using "repeat"

2013-01-06 Thread mary
Hi Jim, The last question: I changed my function robustm () to have as output the scatter matrix and the data to re-enter into the process and I used as suggested you "while do", and seems to work without errors. iterate.robustm<-function(x,z) { b<-robustm(x,z)

Re: [R] random effects model

2013-01-06 Thread rex2013
Hi A.K Regarding my question on comparing normal/ obese/overweight with blood pressure change, I did finally as per the first suggestion of stacking the data and creating a normal category . This only gives me a obese not obese 14, but when I did with the wide format hoping to get a obese14,norm

[R] fPortfolio-portfolio optimization

2013-01-06 Thread Darius H
Hello everyone, I have been spending many hours on a seemingly simple portfolio optimization problem using the package fPortfolio. My optimization problem is slightly different than a standard one such that I have a known set of asset returns. My problem is how to collect this information int

Re: [R] nls, controling the max. number of iterations; was: (no subject)

2013-01-06 Thread Uwe Ligges
Please read the posting guide and use a sensible subject line, tell us about the R version you are using, and add a *reproducible* example. We get: Error in nls(npe ~ SSgompertz(npo, Asym, b2, b3), data = f, control = nls.control(maxiter = 500)) : object 'f' not found Best, Uwe Ligges On

Re: [R] group variables in classes

2013-01-06 Thread Uwe Ligges
On 04.01.2013 17:10, catalin roibu wrote: Dear R users, I want to group the d values in classes. If I use this script I have a problem. classes <- function(x, n){ s <- seq(0, ceiling(max(x)), by = n) factor(n*findInterval(x, s), levels = s) } z<-sapply(tapply(t$d,t$plot,function(x) classe

Re: [R] Predicting New Data -

2013-01-06 Thread Uwe Ligges
On 04.01.2013 19:22, rydood wrote: I am having trouble predicting new data with a model created from package mboost: mb1<-glmboost(as.formula(formula1),data=data_train,control=boost_control(mstop=400,nu=.1)) f.predict<-predict(mb1,newdata=data_train) Error in scale.default(X, center = cm, s

Re: [R] nested, unbalanced anova

2013-01-06 Thread peter dalgaard
On Jan 6, 2013, at 09:45 , peter dalgaard wrote: > > Just avoid things like Type-III sums of squares (base R won't do them, but > popular add-ons will) because they get it wrong when cell counts are unequal. That might be a bit unfair. Type-III methodology has its proponents, I'm just not one

[R] Show density of coordinates per raster pixel

2013-01-06 Thread Anja
I have a raster file of the whole world and coordinates (latitude and longitude). I want to plot the coordinates on the raster file by showing the densitiy of the coordinates per raster pixel by using colours. So in the end I can see e.g. dark read at places in the world where there are high concen

Re: [R] random effects model

2013-01-06 Thread arun
Hi, I am  not very familiar with the geese/geeglm().  Is it from library(geepack)? Regarding your question: " Can you tell me if I can use the geese or geeglm function with this data eg: : HIBP~ time* Age Here age is a factor with 3 levels, time: 2 levels, HIBP = yes/no. >From your original data:

Re: [R] Rounding

2013-01-06 Thread Artur Augusto
For more details about floating-point: http://docs.oracle.com/cd/E19957-01/806-3568/ncg_goldberg.html 2013/1/5 peter dalgaard > > On Jan 5, 2013, at 20:30 , Rolf Turner wrote: > > > On 01/06/2013 07:42 AM, David Arnold wrote: > >> Hi, > >> > >> Can someone explain this: > >> > >>> options(digit

Re: [R] nested, unbalanced anova

2013-01-06 Thread John Fox
Dear Peter, Thank you for the clarification, since one (I hope) popular add-on that computes type-II and -III tests for repeated-measures designs is the Anova() function in the car package. The type-II tests are, in my opinion, preferable, because they are maximally powerful, e.g., for main effe

[R] how to aggregate T-test result in an elegant way?

2013-01-06 Thread Yao He
Dear all: Plan 1: I want to do serval t-test means for different variables in a loop , so I want to add all results to an object then dump() them to an text. But I don't know how to append T-test result to the object? I have already plot the barplot and I want to know an elegant way to report ra

Re: [R] how to aggregate T-test result in an elegant way?

2013-01-06 Thread Yao He
Thank you,it is really helpful everytime. I didn't provide any example data because I thought it is just a question of how to report t.test() result in R. However,as you say,it is better to show more details for finding an elegant way In fact I generate a 3-dimension array like that: str(a) num

[R] function to export multiple results to appended .csv file

2013-01-06 Thread Irucka Embry
Hi, how are you? I have an attached file (StationIDs) that lists 74 observation sites that I need to process using the EGRET/WRTDS R-package. For each site, I need to load information into the Sample, INFO, and Daily fields. The "sitenumber" in the following code refers to one of the 74 observati

Re: [R] how to aggregate T-test result in an elegant way?

2013-01-06 Thread arun
Hi, You didn't provide any example data.  So, I am not sure whether this helps. set.seed(15) dat1<-data.frame(A=sample(10:20,5,replace=TRUE),B=sample(18:28,5,replace=TRUE),C=sample(25:35,5,replace=TRUE),D=sample(20:30,5,replace=TRUE))  dat2<-dat1[,-1] # I forgot to paste this line  res<-lapply(la

[R] Changing mtext direction, or using text for the margin?

2013-01-06 Thread Michael Rennie
Hi all, I have read through the archives, but can't find a solution to this problem. I need the text direction on "dependent B", plotted in margin 4, to go top to bottom (opposite what it is now). Here's some sample code: #plot with mtext example par(mgp = c(2,1,0), mfrow=c(2,2), las=1, mar

Re: [R] how to aggregate T-test result in an elegant way?

2013-01-06 Thread arun
HI, I tried to create an example dataset (as you didn't provide the data). set.seed(25) a<-array(sample(1:50,60,replace=TRUE),dim=c(2,10,3)) dimnames(a)[[1]]<-c("13%","21%") dimnames(a)[[2]]<-paste("TWF2H",101:110,sep="") dimnames(a)[[3]]<-c("EW.INCU","EW.17.5","EMW") str(a) # int [1:2, 1:10, 1:3