Re: [R] randomForest: predictor importance (for regressions)

2010-05-06 Thread Dimitri Liakhovitski
>> Andy, I'll explain why I am asking. I probably should have >> done it in the beginning: >> I am asking not in order to figure out how to do it. I am >> asking in order to figure something that' was done around >> November 01, 2008. >> Back then, a piece of code was run where from the object of >

Re: [R] randomForest: predictor importance (for regressions)

2010-05-06 Thread Liaw, Andy
From: Dimitri Liakhovitski > >> Andy, I'll explain why I am asking. I probably should have > done it in > >> the beginning: > >> I am asking not in order to figure out how to do it. I am > asking in > >> order to figure something that' was done around November 01, 2008. > >> Back then, a piece

Re: [R] randomForest: predictor importance (for regressions)

2010-05-06 Thread Dimitri Liakhovitski
Thank you very much, Andy. I did turn off HTML - hope it'll solve the problem! > Andy, but it is the FIRST column in $importance (not the SECOND) that is > labeled "%IncMSE". The second column is labeled "IncNodePurity". So, I > am confused - which one is the mean decrease in accuracy? > Or, maybe

Re: [R] randomForest: predictor importance (for regressions)

2010-05-06 Thread Liaw, Andy
> From: Dimitri Liakhovitski > Thank you very much, Andy. > I did turn off HTML - hope it'll solve the problem! Indeed it does! [...] > > [AL]: As I said, you are recommended to use importance() to extract > > variable importance.  The recommendation is for avoiding confusions > > like yours

Re: [R] randomForest: predictor importance (for regressions)

2010-05-06 Thread Liaw, Andy
Not that I want to pick on you, but can you turn off the html format in your messages? The mailing list balk at such format, and I can't reply in plain text with the right formatting of previous messages (had to manually remove the tabbed indents that Outlook added when changed to plain text). Se

Re: [R] randomForest: predictor importance (for regressions)

2010-05-06 Thread Dimitri Liakhovitski
Andy, thank you - and sorry for being a bit slow (see my questions below): On Thu, May 6, 2010 at 8:37 AM, Liaw, Andy wrote: > See reply inline below. > > Andy > > From: Dimitri Liakhovitski > > > > I have a question about predictor importances in randomForest. > > > > Once I've run randomForest

Re: [R] randomForest: predictor importance (for regressions)

2010-05-06 Thread Liaw, Andy
See reply inline below. Andy From: Dimitri Liakhovitski > > I have a question about predictor importances in randomForest. > > Once I've run randomForest and got my object, I get their importances: > rfresult$importance > I also get the "standard errors" of the permutation-based importance > m

[R] randomForest: predictor importance (for regressions)

2010-05-05 Thread Dimitri Liakhovitski
I have a question about predictor importances in randomForest. Once I've run randomForest and got my object, I get their importances: rfresult$importance I also get the "standard errors" of the permutation-based importance measure: rfresult$importanceSD I have 2 questions: 1. Because I am dealin