> so I want to measure how strong the exclusiveness between two specific
> > mutation types across those patients with at least one mutation type.
>
> >
>
> > Then put the pair of mutations with strong negative mutations on the top
> > rows by order of negative mutat
O'Keefe ; r-help@r-project.org
Subject: Re: [R] please help generate a square correlation matrix
Your expanded explanation helps clarify your intent. Herewith some comments. Of
course, feel free to ignore and not respond. And, as always, my apologies if I
have failed to comprehend your intent.
gative correlated mutations,
> the drug treatment for cancer patients is usually only for those patients
> carrying the specific mutation,
>
> then it is informative to know how strong the negative correlation when
> considering different combination of treatment strategies.
>
>
>
mutation,
then it is informative to know how strong the negative correlation when
considering different combination of treatment strategies.
Ding
From: R-help On Behalf Of Richard O'Keefe
Sent: Saturday, July 27, 2024 4:47 AM
To: Bert Gunter
Cc: r-help@r-project.org
Subject: Re: [R] please
;-gene22mut.coded
> > > > r <- P <- matrix(NA, nrow = 22L, ncol = 22L,
> > > > dimnames = list(names(dat), names(dat)))
> > > >
> > > > for(i in 1:22) {
> > > >#i=1
> > > >x <- dat[[i]]
t: Thursday, July 25, 2024 11:26 AM
> > > To: Rui Barradas ; r-help@r-project.org
> > > Subject: Re: [R] please help generate a square correlation matrix
> > >
> > > HI Rui, Thank you for the help! You did not remove a row if zero values
> > > exist in bot
tem2[,2])
> >r[i, j] <- tmp3$estimate
> > P[i, j] <- tmp3$p.value
> > }
> >}
> > }
> > r<-as.data.frame(r)
> > P<-as.data.frame(P)
> >
> > From: R-help On Behalf Of Yuan Chun Ding via
> > R-help
>
5, 2024 11:26 AM
To: Rui Barradas ; r-help@r-project.org
Subject: Re: [R] please help generate a square correlation matrix
HI Rui, Thank you for the help! You did not remove a row if zero values exist in both
column pair, right? Ding From: Rui Barradas Sent: Thursday,
July 25, 2024 11: 15 AM To: Yua
.test(tem2[,1],tem2[,2])
r[i, j] <- tmp3$estimate
P[i, j] <- tmp3$p.value
}
}
}
r<-as.data.frame(r)
P<-as.data.frame(P)
From: R-help On Behalf Of Yuan Chun Ding via
R-help
Sent: Thursday, July 25, 2024 11:26 AM
To: Rui Barradas ; r-help@r-project.org
Subject: Re: [
HI Rui,
Thank you for the help!
You did not remove a row if zero values exist in both column pair, right?
Ding
From: Rui Barradas
Sent: Thursday, July 25, 2024 11:15 AM
To: Yuan Chun Ding ; r-help@r-project.org
Subject: Re: [R] please help generate a square correlation matrix
Às 17: 39 de
Às 17:39 de 25/07/2024, Yuan Chun Ding via R-help escreveu:
Hi R users,
I generated a square correlation matrix for the dat dataframe below;
dat<-data.frame(g1=c(1,0,0,1,1,1,0,0,0),
g2=c(0,1,0,1,0,1,1,0,0),
g3=c(1,1,0,0,0,1,0,0,0),
g4=c(0,1,0,1,
Hi R users,
I generated a square correlation matrix for the dat dataframe below;
dat<-data.frame(g1=c(1,0,0,1,1,1,0,0,0),
g2=c(0,1,0,1,0,1,1,0,0),
g3=c(1,1,0,0,0,1,0,0,0),
g4=c(0,1,0,1,1,1,1,1,0))
library("Hmisc")
dat.rcorr = rcorr(as.matrix(dat))
da
В Tue, 14 Mar 2023 02:03:29 +0200
Guy Kelman пишет:
> A while ago I tried to bundle packages for offline installations. For
> this I created a script that would access
> ftp://cran.r-project.org/pub/R/src/contrib/ for each package in a
> loop.
Next time, follow the instructions at
https://cran.r
Dear r-help@,
A while ago I tried to bundle packages for offline installations. For this
I created a script that would access
ftp://cran.r-project.org/pub/R/src/contrib/ for each package in a loop.
The first trial was bugous and it generated many bad URL requests to
cran.r-project.org
>From that m
On Fri, 5 Nov 2021 12:29:21 +0530
Shrinivas Dharma wrote:
> I am trying to run the following double loop which I have written
> but it is not running.
Thanks for providing the code, but it's much easier to help you if you
provide the data, too. Use dput(head(...)) to make it easy for us to
copy
I am trying to run the following double loop which I have written but it
is not running.
Unable to get my head around the mistake. Please try to spot the bug and
help
> for(i in 1:122){
+ for(j in 1:68){
+ if(V(FriendGraph)$name[i]==names[j]){
+ gender_vector[i]<-sex[j]
+ break;}
+ else{gender_ve
: Re: [R] please help with "could not find function "ComBat.mc" "
Hi Yuan,
The package named "Enmix" is maintained on Bioconductor. It seems to be
specific to particular lab equipment and so all I can advise is:
1) Try your question on the Bioconductor help list
2) I
Hi Yuan,
The package named "Enmix" is maintained on Bioconductor. It seems to be
specific to particular lab equipment and so all I can advise is:
1) Try your question on the Bioconductor help list
2) If no help there contact Zongli Xu (the maintainer)
Jim
On Thu, Nov 12, 2020 at 11:40 AM Yuan Ch
Hi All,
I am very sorry to bother you.
This week, I updated my R from 3.5.3 to 4.0.3, reinstalled all required R
packages and reran the following R code; then got the following error: could
not find function "ComBat.mc".
> #' firstly Removing chip-well batch effects using ComBat from the
As a C implementation of merge sort, that is the very reverse of impressive.
I would not translate *that* code into anything.
There is a fundamental difference between between arrays in C and arrays in R,
and it is the same as the difference between Python and R.
You are MUCH better to start from
The obvious question is "why?"
If you just want to sort stuff, ?sort and ?order tell you about the
sorting methods available in R.
If you want to translate this specific algorithm into R for some reason,
(a) if you don't know enough about array processing in R to do this yourself,
how are you
And similar to my response to the C++ question you posted, it is
possible to incorporate Python code into R programs using the
reticulate package.
On Sun, Dec 15, 2019 at 5:58 AM Boris Steipe wrote:
>
> See my response to the C++ question you posted a minute later.
>
> B.
>
>
>
>
> > On 2019-12-1
It is fairly easy to incorporate C++ code into R programs using the
Rcpp package.
Definitely worth the effort to learn how to do this.
On Sun, Dec 15, 2019 at 5:48 AM Boris Steipe wrote:
>
> See this thread why that's a bad idea ...
> https://stackoverflow.com/questions/26080716/merge-sort-in-r
See my response to the C++ question you posted a minute later.
B.
> On 2019-12-15, at 05:35, Александр Дубровский wrote:
>
> # Iterative Merge sort (Bottom Up)
>
> # Iterative mergesort function to
> # sort arr[0...n-1]
> def mergeSort(a):
>
>current_size = 1
>
># Outer loop for t
See this thread why that's a bad idea ...
https://stackoverflow.com/questions/26080716/merge-sort-in-r
... and use the code given there, or give us some context why a literal
translation would be important to you.
Cheers,
Boris
> On 2019-12-15, at 05:37, Александр Дубровский wrote:
>
> /*
/* Iterative C program for merge sort */
#include
#include
/* Function to merge the two haves arr[l..m] and arr[m+1..r] of array arr[]
*/
void merge(int arr[], int l, int m, int r);
// Utility function to find minimum of two integers
int min(int x, int y) { return (xhttps://stat.ethz.ch/mailman/l
# Iterative Merge sort (Bottom Up)
# Iterative mergesort function to
# sort arr[0...n-1]
def mergeSort(a):
current_size = 1
# Outer loop for traversing Each
# sub array of current_size
while current_size < len(a) - 1:
left = 0
# Inner loop for merge call
Hello Rui, yes, I thought of that and rebooted RStudio and only loaded the
specific pkgs for this project and that fixed that issue.
Thank you Rui!
WHP
From: Rui Barradas
Sent: Wednesday, June 12, 2019 3:01 PM
To: Bill Poling ; r-help (r-help@r-project.org)
Subject: Re: [R] Please help
quot;NULL"
WHP
From: Rui Barradas
Sent: Wednesday, June 12, 2019 2:03 PM
To: Bill Poling ; r-help (r-help@r-project.org)
Subject: Re: [R] Please help with ggplot error
Hello,
Works with me, as soon as I corrected "Loess" to "loess".
Hope this helps,
Rui Barradas
:
no applicable method for 'margin' applied to an object of class "NULL"
WHP
From: Rui Barradas
Sent: Wednesday, June 12, 2019 2:03 PM
To: Bill Poling ; r-help (r-help@r-project.org)
Subject: Re: [R] Please help with ggplot error
Hello,
Works with me, as soon as I corre
Oh my, sheesh! Oh my gosh!
UGH!
Thank you Rui!
WHP
From: Rui Barradas
Sent: Wednesday, June 12, 2019 2:03 PM
To: Bill Poling ; r-help (r-help@r-project.org)
Subject: Re: [R] Please help with ggplot error
Hello,
Works with me, as soon as I corrected "Loess" to "loess&quo
Hello,
Works with me, as soon as I corrected "Loess" to "loess".
Hope this helps,
Rui Barradas
Às 18:56 de 12/06/19, Bill Poling escreveu:
#RStudio Version 1.2.1335
sessionInfo()
#R version 3.6.0 Patched (2019-05-19 r76539)
#Platform: x86_64-w64-mingw32/x64 (64-bit)
#Running under: Windows 1
#RStudio Version 1.2.1335
sessionInfo()
#R version 3.6.0 Patched (2019-05-19 r76539)
#Platform: x86_64-w64-mingw32/x64 (64-bit)
#Running under: Windows 10 x64 (build 17134)
Hello
I am getting an error for which I have googled to remedy but have not found a
resource for it.
I found this but it
I don't use coxphf, but it is generally a bad idea to reference variables via
multiple environments (e.g. global and the data= argument in this case)
directly from within a formula. Just use FAM138A.chr wherever you have used
test[,6] and it should work.
--
Sent from my phone. Please excuse my
Hi R Users,
I am very frustrated with the following code. Please do me a favor to run it.
after reading into the test data set (I also pasted the data set below), the
first line of code for "res_coxphf" did not work and generated the error code
below. but the other three line worked well. the
I am trying to figure out the algorithm you are using to calculate
event_episodes, event_status, and start_minutes.
Where does the 129600 come from?
Why is the start(minutes) 0 for the last row instead of 40?
Mark
R. Mark Sharp, Ph.D.
msh...@txbiomed.org
> On Jul 5, 2017, at 1:03 AM, Sunny
Strictly speaking, this is reliability, not survival, data, since
failed pumps are apparently repaired and put back in service as new.
Also, it is not clear from your data whether there is interval
censoring: is the recorded "event" time (failure) the actual failure
time -- so no censoring -- or th
Mark,
Below is the sampled simulated granular data format for pumps for
trial period of 3 months that I need to transform for survival
analysis:
3 months = (60*24*90) minutes i.e 129600 minutes
pump_id timingsevents vibration temprature flow
pump1 01-07-2017 00:00 0
A small example data set that illustrates your question will be of great value
to those trying to help. This appears to be a transformation that you are
wanting to do (timestamp to units of time) so a data representing what you have
(dput() is handy for this) and one representing what you want t
Thanks Boris and Bret,
I was successful in simulating granular/transactional data.
Now I need some guidance to transform the same data in format acceptable
for survival analysis i.e below format:
pump_id | event_episode_no. | event(0/1) | start | stop | time_to_dropout
The challenge I'm experienc
In principle what you need to do is the following:
- break down the time you wish to simulate into intervals.
- for each interval, and each failure mode, determine the probability of an
event.
Determining the probability is the fun part, where you make your domain
knowledge explicit and i
I think you need to find a local consultant. Someone here might have a
suggestion or two where to look (as I do below), but this list only
provides help on R programming code, not statistical issues (see
programming guide below for details).
You might wish to have a look at the CRAN survival analy
Hi friends,
I haven't done such a simulation before and any help would be greatly
appreciated. I need your guidance.
I need to simulate end to end data for Reliability/survival analysis of a Pump
,with correlation in place, that is at 'Transactional level' or at the
granularity of time-minutes
Hi Maryam,
Your labels have been "greeked" as the font is too small to be
displayed properly. If you must use PNG format, specify your image
file at least twice as high.
png("pheatmap.png",width=1254,height=5000)
PDF would be a better choice as you can just zoom in and scroll down.
Jim
On Mon,
> On Oct 3, 2016, at 4:43 AM, maryam moazam wrote:
>
> Hi all,
>
> I'm trying to show about 190 items using "pheatmap" package. I'm working
> with R 3.3.1 on windows 7. I used the following code:
>
> pheatmap(mat_data, cellwidth=20, cluster_rows = FALSE, cluster_cols =
> FALSE, fontsize=5, fon
Hi all,
I'm trying to show about 190 items using "pheatmap" package. I'm working
with R 3.3.1 on windows 7. I used the following code:
pheatmap(mat_data, cellwidth=20, cluster_rows = FALSE, cluster_cols =
FALSE, fontsize=5, fontsize_row=5, margins=c(5,10))
The resulted image is attached. Please
Thanks for getting back to me. Worked like a charm.
Ken
kmna...@gmail.com
914-450-0816 (tel)
347-730-4813 (fax)
> On Aug 22, 2016, at 11:45 PM, Thomas Mailund wrote:
>
> Hi Ken,
>
> You are trying to install R as a package. That won't work. The .pkg file you
> downloaded from https://cra
Follow up on my previous mail.
See the FAQ for OS X :https://cran.r-project.org/bin/macosx/RMacOSX-FAQ.html
Read the section "3.2 Installation of packages". It tells it all.
(reachable from the contents entry "How to install packages").
Berend
> On 23 Aug 2016, at 08:27, Berend Hasselman wro
> On 22 Aug 2016, at 22:17, KMNanus wrote:
>
> I’m a newbie running 3.2.4 on a mac equipped with Yosemite (10.10.5).
>
> I want to update to 3.3.1 and have downloaded the package, but have not been
> able to install it. I’ve tried install.packages("R-3.3.1.tar.gz”) and
> install.packages("R-
Hi Ken,
You are trying to install R as a package. That won't work. The .pkg file you
downloaded from https://cran.r-project.org/bin/macosx/ is an installer, though,
so if you just double-click on it, it should take you through the installation.
After that you probably need to install a number o
I’m a newbie running 3.2.4 on a mac equipped with Yosemite (10.10.5).
I want to update to 3.3.1 and have downloaded the package, but have not been
able to install it. I’ve tried install.packages("R-3.3.1.tar.gz”) and
install.packages("R-3.3.1.pkg”) after downloading both files.
I get an error
The file may have been stored in the UTF-16 encoding (what Windows Notepad
calls "Unicode"). If so, adding fileEncoding="UTF-16" to the read.table
command might read it correctly.
Bill Dunlap
TIBCO Software
wdunlap tibco.com
On Thu, Jul 14, 2016 at 3:49 PM, Christa Rose wrote:
> Can someone pl
Christa,
As others are noting, the file is not a text file.
Open the file in Notebook or Notepad. If the editor complains, then
open it in Word. Save it as a "plain text" file. You will have to
choose the file type in the "Save As" dialog. You may run into other
issues such as the field separ
On 14/07/2016 6:49 PM, Christa Rose wrote:
Can someone please help? The read.table command is not working for me I
think because Windows has my account name stored as "Christa Rose" with a
space in it. Is this a problem? I have tried many syntax iterations, and
cannot get around this.
I don't t
Hi Christa,
The error messages tell you that the file contains NULL characters,
which can cause problems with reading files. You can remove these
characters with a "hex editor". I am not familiar with those used on
Windows, but look at this Web page:
http://alternativeto.net/software/okteta/?platf
Can someone please help? The read.table command is not working for me I
think because Windows has my account name stored as "Christa Rose" with a
space in it. Is this a problem? I have tried many syntax iterations, and
cannot get around this.
Here is an example of the syntax I've used:
> RanMinePl
ot;, "19:00", "21:00", "23:00", "3:00", "5:00", "7:00", "9:00"
), class = "factor"), Kontrolor = structure(c(6L, 6L, 6L, 6L,
6L, 6L, NA, NA, NA), .Label = c("CLLAB", "KOŠUTKOVÁ", "KOUTNÁ PETRA",
"KOVÁŘO
In line
John Kane
Kingston ON Canada
> -Original Message-
> From: bgunter.4...@gmail.com
> Sent: Mon, 14 Mar 2016 07:45:28 -0700
> To: damjanfaks2...@gmail.com
> Subject: Re: [R] please help
>
> ... also, **if** this is homework, this list has a no homework poli
John Kane
Kingston ON Canada
> -Original Message-
> From: damjanfaks2...@gmail.com
> Sent: Mon, 14 Mar 2016 09:43:45 +0100
> To: r-help@r-project.org
> Subject: [R] please help
>
> Dear all,
>
> with the below 2 files I would like to to the t.test and va
... also, **if** this is homework, this list has a no homework policy.
-- Bert
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
On Mon, Mar 14, 2016 at 1:43 AM, Dam
> From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Damjan /
> Subject: [R] please help
>
> Dear all,
>
> with the below 2 files I would like to to the t.test and var.test
>
> but it does not work.
>
> Can you help me ?
>
Dear Damjan
Dear all,
with the below 2 files I would like to to the t.test and var.test
but it does not work.
Can you help me ?
thanks
BR
letost_ur
19721608.3
19731825.6
19741646.8
19751718.8
19761837.5
19771905.9
19781694.6
19791928.3
19801632.6
19812064.4
1982
Hi
From: Sunny Singha [mailto:sunnysingha.analyt...@gmail.com]
Sent: Monday, March 14, 2016 10:37 AM
To: r-help; PIKAL Petr
Subject: Re: [R] Please help -- Cbind data frames within LIST() in R
Thanks Petr,
I'm going through the link that you have provided. Merge won't be useful in my
overflow.com/questions/6988184/combining-two-data-frames-of-different-lengths
>
> http://stackoverflow.com/questions/7196450/create-a-data-frame-of-unequal-lengths
>
> but maybe you want to do actually merging
>
> see
>
> ?merge
>
> Cheers
> Petr
>
> > -Origina
nal Message-
> From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Sunny
> Singha
> Sent: Monday, March 14, 2016 8:16 AM
> To: r-help
> Subject: [R] Please help -- Cbind data frames within LIST() in R
>
> Hi,
> Please help and guide. I want to cbind datafram
Hi,
Please help and guide. I want to cbind dataframes within the list object:
List object 'post_data' contains below sampled data frames:
post_data
$posts
from_id user_name post_msg
$comm
comm_id from_id message
$Likes
username like_id
*Note: The columns in each data frame
uggestions on how to ask a question on the R-help list
>
> John Kane
> Kingston ON Canada
>
>
>> -Original Message-
>> From: ghada.f...@gmail.com
>> Sent: Mon, 7 Sep 2015 16:57:19 +0300
>> To: r-help@r-project.org
>> Subject: [R] please help me fo
Some suggestions on how to ask a question on the R-help list
John Kane
Kingston ON Canada
> -Original Message-
> From: ghada.f...@gmail.com
> Sent: Mon, 7 Sep 2015 16:57:19 +0300
> To: r-help@r-project.org
> Subject: [R] please help me for my project
>
> Hello
Hello dears member
I have project to analysis clusters algorithm in R
"K-mean, Hierarchical, Density based and EM"
I want to calculate
Cluster instance , number of iteration , sum of squared error SSE and the
accuracy for each cluster algorithms that i mention above
And the log likelihood for EM an
Joseph Mbowe writes:
> Dear R members, I want to call my R script thorough php but no I am not
> getting output
> When I call my r script by bat file works fines also when run by Rstudio it
> works fines
> but when i cant call via php
> here is the php code:
> exec('C:/"Program Files"/R/R-3.2.0/
Dear R members, I want to call my R script thorough php but no I am not
getting output
When I call my r script by bat file works fines also when run by Rstudio it
works fines
but when i cant call via php
here is the php code:
' ;
?>
here is R script
args=(commandArgs(TRUE))
library(ggplot2)
l
Hi Ghada,
The value returned by Mclust ("m" in your example) has different
components from say the hierarchical clustering. The second argument
for "cluster.stats" is the cluster IDs of the objects in the initial
set. Perhaps if you call it like this:
cluster.stats(d,m$classification)
I don't hav
Hello dears
I using (R tool) in my project
and I want to compare the results betwen k-mean cluster ,Hierarchical
cluster and EM cluster
I use cluster.stats() it's work on k-mean cluster and hrarichal cluster
but not work in EM
Hello Dears
I Use R tool in my project
I want to do comparison of t
This mailing list has a no homework policy (read the Posting Guide, please,
which also requests that you post in plain text format only). If this is not
homework then you will have to be a bit more specific about what you know and
what you don't in order to get useful help. Questions about why y
..@r-project.org] On Behalf Of ANNA
SIMEONIDOU
Sent: Tuesday, April 1, 2014 3:37 AM
To: r-help@r-project.org
Subject: [R] Please help! Matrices and parameter of time
Hi, Well, the solution to my problem maybe is easy, but i have
really stuck with this.
I have a process which evolves in three times, so t
Hi, Well, the solution to my problem maybe is easy, but i have really stuck
with this.
I have a process which evolves in three times, so there is the parameter of
time (t=1,2,3).More particularly i have three 4*4 matrices, one for each time.
In other words each element has three cordinates: tim
Hi,
replace `lst2` with:
#Subset of data
lst1Sub <- lapply(lst1Not1970,function(x) x[c(1:25, 18707:18708)])
lst2 <- lapply(lst1Sub,function(x) {dateSite <- gsub("(.*G.{3}).*","\\1",x);
dat1 <- data.frame(Year=as.numeric(substr(dateSite,1,4)),
Month=as.numeric(substr(dateSite,5,6)),Day=as.numeri
Thanks AK.
Great job. I appreciate your effort.
Atem.
On Monday, March 31, 2014 11:28 AM, arun wrote:
Hi,
replace `lst2` with:
#Subset of data
lst1Sub <- lapply(lst1Not1970,function(x) x[c(1:25, 18707:18708)])
lst2 <- lapply(lst1Sub,function(x) {dateSite <- gsub("(.*G.{3}).*","\\1",x);
dat1 <
Hi Atem,
Try this:
I created 3 folders (Precip, Tmax, Tmin) within the folder "sample"
#working directory: sample
list.files()
#[1] "Imputation_Daily_Sim01.dat""Imputation_Daily_Sim02.dat"
#[3] "Imputation_Daily_Sim03.dat""Precip"
#[5] "Sim1971-2000_Daily_Sim001.
Hi,
Try either:
Ceramic <- read.table("ceramic.dat",header=TRUE)
Ceramic1 <- Ceramic
Ceramic$indx <- ((seq_len(nrow(Ceramic))-1)%/%60)+1
library(plyr)
DF1 <- data.frame(M=as.vector(t(ddply(Ceramic,.(indx), colwise(mean))[,-1])),
S=as.vector(t(ddply(Ceramic,.(indx),colwise(sd))[,-1])),Rep = 60)
co
I have a matrix of p values below. Column1 are the analytes and the other
columns are p values comparing time points.
How do I convert this table of pvalues into adjust p values for FDR/BH
This is wrong does anyone know how to fix this code
a<-read.table("file", header=T, sep"\t")
b<-as.numeric
There's probably a better way to do it, but here's one way:
require(stringr)
windows()
file_list <- list.files(pattern=".txt")
for (file in file_list)
{
dataset <- read.table(file, header=TRUE, sep="\t")
plot(dataset)
savePlot(filename=str_replace(file,".txt",""),type="png")
K.
- Original Message -
From: David Lyon
To: "r-help@r-project.org"
Cc:
Sent: Tuesday, April 2, 2013 12:13 AM
Subject: [R] please help, iteration through a list of files and plot each one
I have many files in 1 directory, file names end in .txt.
Each file has 2 columns
col1 co
I have many files in 1 directory, file names end in .txt.
Each file has 2 columns
col1 col2
2 3
3 4
4 5
5 6
I want to make a list of the file names and iterate through each plotting them
in a separate file $filename\.png with the png swapped for txt.
So far I have this, can someone help
After you get that message, use
conflicts()
(and read the help page for the conflicts function)
-Don
--
Don MacQueen
Lawrence Livermore National Laboratory
7000 East Ave., L-627
Livermore, CA 94550
925-423-1062
On 1/23/13 10:04 PM, "Fumie Sugahara" wrote:
>Hi
>
>The message occurred
Hi,
It means that the functions "combn" from the package "utils" is masked
because a function with the same name exists in loaded package "combinat".
You still can access the one from the package "utils" using:
> utils::combn
HTH,
Pascal
Le 24/01/2013 15:04, Fumie Sugahara a écrit :
Hi
Th
Hi
The message occurred from R, when I was selected of "optimization > block
diagonal Fhiser matrix" and used the attached file on PFIM.
Could you please advise me about the following message?
*
Loading required pakage: combinat
Attaching package:'combinat'
The follow
i want to generate an odf report using R,
the report is generated but the run stop just after the instruction:
odfWeave(inputFile,outputFile)
and i get this error:
Error in odfWeave(inf, outf) : Error removing work dir
please help me it's an emergency.
thanks
--
View this message in context:
t couldn't also be attributed to items
within that condition. So long as this isn't an issue for you, you should be
fine.
Freya
--
Message: 72
Date: Wed, 17 Oct 2012 16:47:08 -0400
From: Ista Zahn
To: Ralitt
Cc: r-help@r-project.org
Subject: Re: [R]
Hi,
On Wed, Oct 17, 2012 at 3:25 PM, Ralitt wrote:
> Hi all,
> I am just starting my first models in R and am having trouble with some of
> the basics.
>
> The main things at the moment are about setting up my data correctly. I
> have a repeated measures design-all participants complete 4 experi
Hi all,
I am just starting my first models in R and am having trouble with some of
the basics.
The main things at the moment are about setting up my data correctly. I
have a repeated measures design-all participants complete 4 experimental
conditions. I want to fit a linear mixed effects model w
On 12-09-30 2:18 PM, Andras Farkas wrote:
Dear All,
I have reviewed some examples over the net on this issue, but still not getting
the results. I have the following text and code i would like to place into a
pdf with sweave, but I would like to change the margins on the produced
document. T
Dear All,
I have reviewed some examples over the net on this issue, but still not getting
the results. I have the following text and code i would like to place into a
pdf with sweave, but I would like to change the margins on the produced
document. The options(width=60) I guess should do thi
On 8/23/12 7:37 AM, "David Lyon" wrote:
> Can someone show me some code to do normalization by the median of some
> control genes for the example below?
> Many Many Thanks in advance
>
>
> This strategy selects a subset of genes (called ³control genes²) and makes the
> median of their data distri
HI,
You could try:
limma package: normalizeWithinArrays()
A.K.
- Original Message -
From: David Lyon
To: "r-help@r-project.org"
Cc:
Sent: Thursday, August 23, 2012 8:37 AM
Subject: [R] Please helpnormalization by the median of some control genes
Can someone show me so
Hello,
I'm not sure I understand what you want. You want the medians to be
"similar"? Why not equal?
(The code below assumes ids represent genes.)
d <- read.table(text="
id1id2id3
control10.80.70.6
control20.60.20.4
probe10.30.20.5
probe
Can someone show me some code to do normalization by the median of some control
genes for the example below?
Many Many Thanks in advance
This strategy selects a subset of genes (called “control genes”) and makes the
median of their data distribution similar across arrays.
id1 id2
, after running the script, there is a error I really
unable to understand:
error at data.frame(..., check.names = FALSE) :
parameter value mean different rows 0, 31981
If you can understand what the problem is, please as kind as
offer me a direction.
Many thanks,
;degreesN",as.double(lat))
However, after running the script, there is a error I really unable to
understand:
error at data.frame(..., check.names = FALSE) :
parameter value mean different rows 0, 31981
If you can understand what the problem is, please as kind a
parameter value mean different rows 0, 31981
If you can understand what the problem is, please as kind as offer me a
direction.
Many thanks,
Jun
> Date: Wed, 4 Jul 2012 10:39:29 +0100
> From: kri...@ymail.com
> Subject: Re: [R] Please help
> To: chensh...@hotmai
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