Re: [R] Regarding Issue Running Parallel Computing on Linux RHEL version 8

ttps://www.burns-stat.com/documents/books/the-r-inferno/> to find out how that happened. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the pos

Re: [R] Regarding Issue Running Parallel Computing on Linux RHEL version 8

r N CPUs. Try running your script with the environment variable OPENBLAS_NUM_THREADS set to the string "1". It might be possible to speed up the script by setting OPENBLAS_NUM_THREADS=2 and dividing the number of child processes by the same number. -- Best regards, Ivan ___

Re: [R] Regarding Issue Running Parallel Computing on Linux RHEL version 8

gt; library(lubridate) > library(tis) > library(tsoutliers) Could you identify and share the parts of the script that launch the computation in parallel? -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https

Re: [R] Help Parsing String? From HTML

n-readable text, not machine readable JSON), but the good news is that mystring |> xml_text() |> jsonlite::parse_json() should give you a named list with the desired contents. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUB

Re: [R] mclapply hanging occasionally on macos

ds on the BLAS. What's your sessionInfo()? If you don't get a good answer here, try r-sig-...@r-project.org. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-he

Re: [R] Mutate issue help needed

ode from your messages, I would recommend composing in plain text: https://stat.ethz.ch/pipermail/r-help/2024-December/480371.html -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/li

Re: [R] Confirmation of no Electronic Communication functionality

nality? (For example, does download.file() or install.packages() count as one?) There may be some documents useful for you at <https://www.r-project.org/certification.html>. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNS

Re: [R] Issue with non-standard file 'vert.txt' in R CMD check

the current directory because the user may have a different important file named "vert.txt" in the current directory. Next time you have a similar question, it's better addressed to r-package-de...@r-project.org, not r-help@r-project.org. -- Best regards, Ivan [1] https://github.co

Re: [R] Invalid term in model formula with gmm after formula.tools is loaded

eady reported to the 'formula.tools' maintainer [*], so there isn't much else to do about it. -- Best regards, Ivan [*] https://github.com/decisionpatterns/formula.tools/issues/11 __ R-help@r-project.org mailing list -- To

Re: [R] Invalid term in model formula with gmm after formula.tools is loaded

to work once again (Is there a way to truly unregister an S3 method?) Perhaps gmm::getDat could be made more robust by working directly on the formula/call object instead of going through the string representation. -- Best regards, Ivan [*] https://stat.ethz.ch/pipermail/r-help/2024-October/48

Re: [R] The RV coinertia coefficient to interpret multivariate analysis plots

Different scalings may have resulted in different subsets of related variables passing the "importance" threshold. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/lis

Re: [R] Warning object has offset 0. PDF file

bout the file once again, but it will also produce a reconstructed file, which won't have this particular problem. "qpdf" tries very hard to be "loss-less" about its transformations, so once you verify that the reconstructed file is fine, you can replace the original with i

Re: [R] Time zones in POSIClt objects

; do.call(c, args=_) Its 'tzone' attribute exists mostly for presentation purposes, so even if you lose it, the exact point in UTC-relative time is still intact. -- Best regards, Ivan [1] https://en.cppreference.com/w/c/chrono/mktime [2] https://pubs.opengroup.org/onlinepubs/979991979

Re: [R] apply

ese. If you had a pair of vectors of _random variates_, the situation would be different, but those are more abstract mathematical concepts. You would need to sample every random variate, producing two matrices 'x' and 'y' in order to calculate a covar

Re: [R] apply

one number. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide https://www.R-project.org/posting-guide.html and provide comme

Re: [R] when installing packages for R on Linux, is it better to use my distro's package manager, or install.packages()?

n old compiler, old third-party dependencies, and so on. To summarise, for Linux Mint, binary *.deb packages (especially r2u) offer great convenience, but the more dependencies your project has, the more effort it will take to reproduce it later, when the binaries are

Re: [R] How to install this package

t work because 'termstrc' requires 'rgl' to load and your 'rgl' installation doesn't work. Try following the instructions in the README of the 'rgl' package regarding the OpenGL support. Perhaps it needs to be reinstalled after some updates you

Re: [R] Question about Date Object and time zones

her than UTC) and keeping it a Date object? Not with a plain 'Date'. What should a date in a timezone mean? Start of day? End of day? The whole 24-hour interval (except when it lasts 23 or 25 hours due to DST)? Perhaps you could store one (or two for an interval) POSIXt

Re: [R] store list objects in data.table

Try wrapping the lm() expression in an extra list(): carsreg <- carsdt[, .(fit = list(lm(mpg ~ disp + hp + wt))), by = .(cyl)] # [1] 3 carsreg # cyl fit # # 1: 6 # 2: 4 # 3: 8 -- Best regards, Ivan __ R-help@r-proje

Re: [R] "And" condition spanning over multiple columns in data frame

our "exit" columns in bulk: ( c10Dt$id != 1 & # will be recycled column-wise, as we need is.na(c10Dt[-1]) ) |> # ...and then convert back into a data.frame, as.data.frame() |> # rename the columns... (\(x) setNames(x, sub('cp', 'exit', names(x() |>

Re: [R] non-conformable arrays

ot; "56" "59" "114" ... ..$ : chr "Year" - attr(*, "assign")= int 1 Browse[1]> t(random[['Year']]) |> str() num [1:19, 1:10] 0.175 0.181 0.102 0.119 0.158 ... ...and they are indeed non-conformable. Why is random$Year a matrix? -

Re: [R] Stop or limit to console printing large list and so on

p in your case. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide https://www.R-project.org/posting-guide.html and provide commented,

Re: [R] aggregating data with quality control

'C', 'D')) Since the factor is ordered and can be subject to comparison like status[1] < status[2], you can now use max() on your groups. If the sample contains any 'D's, max() will return a 'D', because it's larger than any 'C's. If th

Re: [R] boxplot of raster and shapefile

method for 'depth' applied to an object of class > "NULL" > In addition: Warning message: > Removed 452451 rows containing non-finite outside the scale range > (`stat_boxplot()`). Thank you for providing a runnable example! Could you please also show the output of st

Re: [R] checking for unstated dependencies in examples ... ERROR

/gRain-Ex.R, try to find out which help page does the line 77 correspond to. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide https:

Re: [R] paired raster boxplots

s' is a list of rasters, 'r' could also contain more than one layer, resulting in stack(r, s) containing more than two layers. In order to avoid the error, you need to see names(rs) and either give the same number of names to the object instead of two, or additionally extract one

Re: [R] paired raster boxplots

s a lot of generic-R troubleshooting advice, which should help you progress past errors like this one without waiting for someone on R-help to reply. -- Best regards, Ivan [1] https://www.burns-stat.com/documents/books/the-r-inferno/ __ R-help@r-projec

Re: [R] Linear regression and stand deviation at the Linux command line

t from which you can extract the values you are interested in (see ?summary.lm). When in doubt, call help(name_of_the_function). -- Best regards, Ivan [1] https://cran.r-project.org/doc/manuals/R-intro.html [2] http://web.archive.org/web/20230106210646/http://ashipunov.info/shipunov/sch

Re: [R] fcaR not for latest R version

n one of its dependencies, which I didn't look at. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide https://www.R-project.org/p

Re: [R] paired raster boxplots

'ggplot2' packages would make them much easier. You will need to reshape your data into long format, with the "value" column for the r/r2 value, the "kind" column saying "r" or "r2", and the "s" column: https://stackoverflow.com/q/20172560

Re: [R] Force conversion of (POSIXct) time zone with base R

27;) set: # time zone information successfully lost and replaced by UTC Sys.time() |> format() |> as.POSIXct(tz = 'UTC') -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/m

Re: [R] Terminating a cmd windows from R

ystem() returns (or is interrupted, terminating the process). You can specify a timeout for a foreground process using the 'timeout' argument of the system() function. If you'd like to manage a background process, consider the 'processx' CR

Re: [R] allequal diff

mask1 | mask2 # drops elements 1, 3, 4, 8 # [1] TRUE FALSE TRUE TRUE FALSE FALSE FALSE TRUE FALSE FALSE -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-he

Re: [R] allequal diff

(), using is.na(getValues(...)) should definitely work. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/po

Re: [R] allequal diff

Use is.na() on getValues() outputs, combine the two masks using the | operator to get a mask of values that are missing in either raster, then negate the mask to choose the non-missing values: all.equal(getValues(r1)[!mask], getValues(r2)[!mask]) -- Best regards, Ivan

Re: [R] Printing

(printing) branch? Then you would be able to always return(invisible(list("ei"=ap,"vi"=vap))), whether printing is TRUE or not. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.et

Re: [R] WDI package commands timing out and not working

ss discriminated against by Cloudflare. Maybe petition the WDI maintainer to export a function that parses a JSON file manually downloaded with a browser? -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https:

Re: [R] WDI package commands timing out and not working

st by accessing it through Tor. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.ht

Re: [R] Difference between stats.steps() and MuMIn.dredge() to select best fit model

pick d before a. A greedy algorithm for K variables out N tests N + (N-1) + ... + (N-K+1) = N*K - K(K-1)/2 models. An exhaustive search would have to test choose(N,K) = N!/(N-K)!/K! models. -- Best regards, Ivan __ R-help@r-project.org mailing

Re: [R] Using optim() function to find MLE

optim() doesn't support the truncated (line search) Newton-CG method. See the 'optimx' and 'nloptr' packages for an implementation of a truncated Newton method (not necessarily exactly the same one). -- Best regards, Ivan __

Re: [R] plotting nnet function....

; package: https://cran.r-project.org/package=caret/vignettes/caret.html If you do encounter an error on your way or get stuck not knowing how exactly to continue, please ask a more specific question. -- Best regards, Ivan __ R-help@r-project.org ma

Re: [R] grDevices segfault when building R4.4.0 on RHEL 9.1.

y emails, seems the RHEL9 system lapack > packages are broken. Will test a bit more. Simon Andrews has also shown me how to reproduce the crash on AlmaLinux: https://stat.ethz.ch/pipermail/r-help/2024-May/479321.html Looks like an ABI incompatibility between gfortran-11 and blas-dev

Re: [R] reticulate + virtual environments

on3, so reticulate is likely thinking that it's the same Python. Thus Python is not initialised again, but you also don't see an error. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.c

Re: [R] Reinterpret data without saving it to a file 1st? Check for integer stopping at 1st decimal?

test the whole column in two function calls. R also has a type.convert function that may be useful in this case: https://search.r-project.org/R/refmans/utils/html/type.convert.html -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE

Re: [R] Problem loading BiodiversityR, Error: package ‘tcltk’ could not be loaded

;t help, make sure to provide your sessionInfo() output. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/

Re: [R] Weird R Studio behaviour...

his configuration any more. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provid

Re: [R] Bug? plot.formula does need support plot.first / plot.last param in plot.default

nes. (1) sounds especially brittle since plot.formula() may dispatch to other plot.* methods. Additionally, great care will need to be taken not to break existing code that calls plot.formula, even if it's already full of workarounds for plot.formula's behaviour. -- Best regards, Iva

Re: [R] simple problem with unquoting argument

); for (i in 1:11) SS[i] <- sum(adds[[i]]) you can write SS <- vapply(adds, sum, numeric(1)) ...and it will perform the same loop inside it, verifying each time that sum(adds[[i]]) returns a single number. -- Best regards, Ivan P.S. I'm sorry for letting our project lapse. __

Re: [R] Referencing Sys.Date to a different time zone

e # [1] "2024-06-28" format(Sys.time(), '%Y-%m-%d', tz = 'Asia/Vladivostok') # [1] "2024-06-29" -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/ma

Re: [R] Regarding the Security Vulnerability CVE 2024 - 27322

in/windows/base/howto-R-devel.html -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide

Re: [R] Regarding the Security Vulnerability CVE 2024 - 27322

files you trust, you've never been in danger from this so-called vulnerability. Feel free to keep running older versions of R. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listi

Re: [R] Naming output file

, instead of manually assigning variables using assign(name, value) and manually reading variables using get(name). -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLE

Re: [R] Naming output file

a file using saveRDS(bop, 'bop.rds'). Lists also compose better with lapply(), parLapply(), and many other functions that operate on collections of R objects. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and m

Re: [R] Bug with writeClipboard in {utils}

В Thu, 20 Jun 2024 18:39:34 +0300 Ivan Krylov via R-help пишет: > > Is there a way to test this patch or will there soon be a published > > patched R version available for download? > > Not directly. Now that the bug is fixed in R-devel (thanks Tomas!), a Windows build

Re: [R] unable to get barchart of censored subjects from ggsurvplot() in survminer package, if there is no predcitor

ot;Time in days", ncensor.plot = TRUE ) p$ncensor.plot$layers[[1]]$aes_params # $colour # [1] "strata" # # $fill # [1] "strata" This can be traced further but I'm not sure how to fix the bug without strata. Giving an explicit argument color = 'black' to ggsurvplot()

Re: [R] What is the HEX code for "transparent" color?

derPlot. The documentation [*] says that the arguments are passed to plotPNG(...) and, eventually, to ragg::agg_png(...) / png(...) / Cairo::CairoPNG(), all of which should support the parameter. -- Best regards, Ivan [*] https://search.r-project.org/CRAN/refmans/shiny/html/renderPlot.html _

Re: [R] Bug with writeClipboard in {utils}

-- Best regards, Ivan [1] https://cran.r-project.org/bin/windows/base/howto-R-devel.html#building-r-from-source-using-rtools44 [2] https://github.com/r-devel/rdevguide/issues/170 [3] https://github.com/r-devel/r-svn/actions/runs/8749727418 __ R-he

Re: [R] Integration of functions with a vector argument

formation about the underlying code for 'cubature' can be found at <https://github.com/stevengj/cubature> and <https://feynarts.de/cuba/>. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see

Re: [R] Bug with writeClipboard in {utils}

example! I was able to reproduce it both with R-4.3.1 on Windows 7 and with a fresh R-devel build on Windows 10. Bug reported at <https://bugs.r-project.org/show_bug.cgi?id=18747>. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To U

Re: [R] Integration of functions with a vector argument

for many evaluations of the function and to return vectors of the resulting values, you'll be able to use the CRAN package 'cubature' <https://CRAN.R-project.org/package=cubature> to integrate it over multiple variables at once. -- Best regards, Ivan ___

Re: [R] Integration of functions with a vector argument

tter performance will require rewriting the function F to be "vectorised", i.e. to accept vectors for arguments and return a vector of the same length. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see h

Re: [R] R Shiny Help - Trouble passing user input columns to emmeans after ANOVA analysis

st one of selected_graph(), cols$column2, selected_model() is a zero-length object (maybe NULL) at this point, which makes the result of the whole expression zero-length too. if (...) only accepts logical scalars, hence the error. -- Best regards, Ivan __ R

Re: [R] Tools to modify highlighted areas in pdf documents?

ee and available on Windows (including from outside Microsoft store). Its annotation features include all kinds of highlights, arrows and lines, both straight and arbitrarily-shaped, quickly available from the "annotations" panel. -- Best regards, Ivan __

Re: [R] wrtiteBin in conjunction with seek : the position in the file is not good when writing

nt', 'read'), 'start', 'write') to set the write pointer to the read pointer before issuing writes. This seems to give me the expected result. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRI

Re: [R] Description of error is untranslated when R_XLEN_T_MAX is exceeded by only 1 element.

t a patch on r-de...@r-project.org or https://bugs.r-project.org ? -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-pr

Re: [R] Is there some way to customize colours for the View output?

column headers. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented

Re: [R] duplicated() on zero-column data frames returns empty

/contributor.r-project.org/> can be helpful. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-gui

Re: [R] R CMD check vs RStudio check

t; up inst/doc when building a source package. Set it to TRUE to force >> a cleanup. See the clean_doc argument. (I didn't know that either, just searched their source code for "inst.*doc".) -- Best regards, Ivan __ R-help@r-project.

Re: [R] Compilation problems with R4.4.0

ifferent causes elsewhere. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide c

Re: [R] Using intervals() function for nlme model - Statistics Lab ETHZ

r models in the manual worries me. I don't know if it's intended to work with 'nlme' models. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PL

Re: [R] Compilation problems with R4.4.0

s-devel and configure --with-blas (to replace Rblas with OpenBLAS), the double complex BLAS test will pass, the build won't crash, and you will get even better performance. -- Best regards, Ivan [*] https://stat.ethz.ch/pipermail/r-devel/2024-March/083302.html __

Re: [R] Compilation problems with R4.4.0

inker flags explicitly with --with-blas=-lwhatever, --with-lapack=-lwhatever. If you're fine with reference BLAS & LAPACK that come with R, try ./configure --without-blas --without-lapack. Normally, R's ./configure tries to prevent linking to an external LAPACK without linking

Re: [R] Compilation problems with R4.4.0

subdirectory: _R_COMPILE_PKGS_=1 R_COMPILER_SUPPRESS_ALL=1 \ R_DEFAULT_PACKAGES=NULL LC_ALL=C \ ../../../bin/R -d gdb --vanilla --no-echo -e \ 'tools:::makeLazyLoading("grDevices")' -- Best regards, Ivan __ R-help@r-project.org ma

Re: [R] Problem with creating a PCA graph in a loop

d). Something like the following should work, untested: geom_label_repel( mapping = aes(label = current_rownames, colour = Treatment), data = data.frame( current_rownames = current_rownames, Treatment = wine.data.filt$Treatment ), # more arguments here ) -- Best regards, Ivan _

Re: [R] Is there some way to customize colours for the View output?

ect on the edit() window. -- Best regards, Ivan [1] https://svn.r-project.org/R/trunk/src/library/utils/src/windows/dataentry.c __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do r

Re: [R] Using intervals() function for nlme model - Statistics Lab ETHZ

n nlme model without any problems. It may help to see if the intervals() output agrees with the bootstrap results from nlraa::boot_nlme(). -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch

Re: [R] R CMD check vs RStudio check

ting confused > and not interpreting .. as the parent directory? "..Rcheck" is built from the argument of R CMD check . followed by ".Rcheck". -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, se

Re: [R] grDevices segfault when building R4.4.0 on RHEL 9.1.

; to include the contents of local variables. The first few entries are probably the most important ones. Not sure what to do with this information yet, but it might provide more clues. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSU

Re: [R] strange behavior in base::as.double

hat the fix will become part of R-4.4.1 when it's released. -- Best regards, Ivan [*] https://github.com/r-devel/r-svn/commit/9069a729f5bf69de8250a4c91dd482fcf64e1154 __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://sta

Re: [R] De-serialization vulnerability?

t even read some of my data correctly, but I believe it's a secure way forward: https://codeberg.org/aitap/unserializeData -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/

Re: [R] function import file csv Openair

package uses utils::read.csv to import the CSV files. Which particular functionality you are currently missing from the openair package? If all else fails, you can go to https://cran.r-project.org/src/contrib/Archive/openair/ and try to install an older version of the package (

Re: [R] Tidyverse/dplyr solution for filling values of a tibble/dataframe from a column with a nested list.

, Map( \(row, cols) rbind(row, simplify2array(cols)), seq_along(tibble$nestedvals), tibble$nestedvals )) sparse <- Matrix::sparseMatrix(spec[1,], spec[2,], x = spec[3,]) -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and

Re: [R] Import multiple tif raster

g: path = r"{C:\Users\Sibylle Stöckli\Desktop\NCCS_Impacts_Lot2_2022\InVEST\Species_Input\valpar_bee_presence}" These two options are explained in help(Quotes). 3. Instead of typing the path, use choose.dir() (Windows only, I think) and select it interactively.

Re: [R] Import multiple tif raster

re giving to list.files (the one starting with /NCCS_Impacts_Lot2_2022/InVEST/...) exists on your computer. Did you mean to start it with a slash, making it an absolute path starting from the root of the filesystem? -- Best regards, Ivan __ R-help@r-project.org mail

Re: [R] Debugging functions defined (locally) inside another functions

at = 4) f() # exists("g") so far is FALSE # Tracing f() step 4 # <-- at this point debug(g) is run # about to run g() # debugging in: g() # debug at #3: { #flag <- TRUE # if (flag) # stop("an error") # } help(trace)

Re: [R] Debugging functions defined (locally) inside another functions

er if I reach into the environment of the publicly available method: Adder <- ggproto(...) # from the example debug(environment(Adder$add)$add) Adder$add(1234) # debugging in: add(..., self = self) # debug на #3: { # self$x <- self$x + n # self$x # } -- Best regards, Ivan ___

Re: [R] Problem with base::order

/main/radixsort.c treats the argument as a scalar (using asLogical(...), not LOGICAL(...) on the R value). -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE d

Re: [R] How to set the correct libomp for R

out of ideas for now, but if I get any, I'll send another message. If you don't get an answer here, try r-sig-...@r-project.org. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mai

Re: [R] CEoptim problems

iven to the || operator. Good luck! -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and pr

Re: [R] Exceptional slowness with read.csv

cond call read.csv() should probably include header = FALSE. Bert's advice to try scan() is on point, though. It's likely that the default-enabled header is not the most serious problem here. -- Best regards, Ivan __ R-help@r-project.org

Re: [R] How to set the correct libomp for R

.table/issues/5957) The debugger may be able to shed more light on the problem than just "yes, this is due to OpenMP": https://github.com/rstudio/rstudio/issues/14517#issuecomment-2040231196 When you reproduce the crash, what does the backtrace say? -- Best regards, Ivan __

Re: [R] duplicated() on zero-column data frames returns empty

x for 1-column input str(duplicated(matrix(0, 5, 1))) # logi [1:5, 1] FALSE TRUE TRUE TRUE TRUE # a dim-1 array for >1-column input str(duplicated(matrix(0, 5, 10))) # logi [1:5(1d)] FALSE TRUE TRUE TRUE TRUE -- Best regards, Ivan __ R-help@r-project

Re: [R] duplicated() on zero-column data frames returns empty vector

, we only get the plain text version automatically prepared by your mailer. This one didn't look so good: https://stat.ethz.ch/pipermail/r-help/2024-April/479143.html Composing your messages to the list in plain text will help avoid the problem. -- Best regards, Ivan _

Re: [R] Problem with new version of R: Mutated vocals

write.table) containing mutated vowels are not read-in > correctly by the function read.table. In a similar manner, try read.table(..., fileEncoding = 'CP1252'). Setting encoding = 'latin1' may also work, even if it's technically a different encoding. -- Best regards, Iva

Re: [R] Error message

ar results with saveRDS(datafilename, 'X1.rds') and data2 <- readRDS('X1.rds')? Does this happen with other R objects that you try to save or in your other scripts? -- Best regards, Ivan __ R-help@r-project.org mailing list -

Re: [R] Error message

and xxd -l 128 X1.RData will give the same output in a more readable manner, but the readBin(...) output from R should be fine too. -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/li

Re: [R] Error message

en R tries to load the file, right at the first few bytes. Is "X1.RData" large? Can you share it, or at least a hexadecimal dump of the first few hundred bytes? -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and mor

Re: [R] Building Packages.

) to my .Rprofile, and it broke quite a few things related to package development until I fixed my .Rprofile. Congratulations on solving the problem! -- Best regards, Ivan __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see htt

Re: [R] Building Packages.

t;CMD", "INSTALL") from the `args` vector and give the rest as the argument to .install_packages() in a fresh process, will it break in a similar manner? Browse[2]> command [1] "/usr/lib/R/bin/R" Browse[2]> args [1] "CMD" "INSTALL" "-l" &q

Re: [R] Building Packages.

ibrary() calls. Generally, packages should not be calling library(). 2. Try a "binary search" approach. Make a copy of your package code but remove half of the files (or half of the functions if they live in a single file). Keep removing a half (or go to the other half) dependi

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