Hi Malte,
I think I asked the same question on Stack Overflow ten years ago:
https://stackoverflow.com/q/13116099/559676 I hope you'll find the answer
helpful there.
Regards,
Yihui
--
https://yihui.org
On Wed, Dec 21, 2022 at 6:19 AM Flender, Malte
wrote:
> Hello,
>
> a few days ago I encount
htmltools_0.5.1.1 jsonlite_1.7.2knitr_1.31
> magrittr_2.0.1markdown_1.1
> methods_4.0.5 mime_0.10 rlang_0.4.10 rmarkdown_2.7
> stats_4.0.5 stringi_1.5.3
> stringr_1.4.0 tinytex_0.31 tools_4.0.5 utils_4.0.5
> xfun_
Could you provide a minimal reproducible example along with your
xfun::session_info('rmarkdown')? Thanks!
Regards,
Yihui
--
https://yihui.org
On Tue, Apr 20, 2021 at 11:06 AM Troels Ring wrote:
>
> Dear friends - newly installed windows 10 and R version 4.0.5
> (2021-03-31) -- "Shake and Throw"
I don't know the answer (there are multiple possible reasons for the
file not being found), but as the first step to debug the problem, you
may replace this chunk
```{r, echo=FALSE}
library(knitr)
source("helper.R", local = knitr::knit_global())
summarized_table<-give_table(params$ldf_sum
e if I am wrong.
>
> Best,
> Ashim
>
> On Wed, Apr 8, 2020 at 8:47 PM Yihui Xie wrote:
>>
>> And please note that knitr::knit_code$get() only works (i.e. returns a
>> named list of code chunks) inside a knitr document when the document
>> _is being knitted_. It doe
And please note that knitr::knit_code$get() only works (i.e. returns a
named list of code chunks) inside a knitr document when the document
_is being knitted_. It doesn't work outside the document. Ideally, you
should use the document parser of knitr, but it is not exported.
Regards,
Yihui
--
http
params$data is "hawaii" in this case, so the output of
``r params$data``
is
`hawaii`
The double backticks don't have any special meaning here. Only the
inside pair of backticks (i.e. `r `) makes sense to R Markdown (or
precisely speaking, knitr). The outside pair will be left untouched
afte
output:
rmarkdown::html_vignette:
toc: true
The syntax is the same for all R Markdown output formats:
https://bookdown.org/yihui/rmarkdown/html-document.html#table-of-contents
Regards,
Yihui
--
https://yihui.name
On Mon, Aug 26, 2019 at 9:32 AM Helmut Schütz wrote:
>
> Dear all,
>
> I can
In case Jeff's point was not clear enough: the *.nb.html file is very
similar to *.ipynb and it is very different with other output formats
that R Markdown generates. A .nb.html file is generated alongside .Rmd
when you preview an R Markdown notebook, and it contains both the R
Markdown source docu
I just have one comment on the multi-language support in R Markdown
(inline below):
On Thu, Oct 11, 2018 at 6:19 AM Ista Zahn wrote:
>
> Hi Spencer,
>
> On Thu, Oct 11, 2018 at 5:08 AM Spencer Graves
> wrote:
> >
> > Hello:
> >
> >
> >What are the differences between Jupyter notebooks an
Although it is not an elegant solution, but if your output format is
HTML, you can add an arbitrary empty HTML element like before your code chunk. Then you can jump to this
via a link like "see [this code chunk](#foo)".
Regards,
Yihui
--
https://yihui.name
On Tue, Aug 29, 2017 at 1:30 PM, Roy
hich can then easily be integrated into a Rmd
> report. I have yet to see how I can include these file into a complete
> report.
>
> Kind regards
>
> Georg
>
>
> - Weitergeleitet von Georg Maubach/WWBO/WW/HAW am 12.06.2017 08:47
> -
>
> Von:Yihui Xie
> An:
, but did not work.
>
> Can you give me a hint where I can find information/documentation on this
> path issue?
>
> Kind regards
>
> Georg
>
>
> > Gesendet: Donnerstag, 08. Juni 2017 um 15:05 Uhr
> > Von: "Yihui Xie"
> > An: g.maub...@weinwolf.d
Why do you have to set the base.dir option?
Regards,
Yihui
--
https://yihui.name
On Thu, Jun 8, 2017 at 6:15 AM, wrote:
> Hi All,
>
> I have to compile a report for the management and decided to use RMarkdown
> and knitr. I compiled all needed plots (using separate R scripts) before
> compilin
I'm the author of the animation package, and I do plan to switch to
the magick package in the future instead of using ImageMagick as a
system dependency.
Regards,
Yihui
--
https://yihui.name
On Wed, Mar 15, 2017 at 12:32 AM, Bert Gunter wrote:
> A google search on "ImageMagick Package R" brough
)
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Mon, Feb 6, 2017 at 9:46 AM, Marc Girondot via R-help
wrote:
> Hi,
>
> I used roxygen2 v5.0.1 to document my package, and all was ok. I have just
> updated to roxygen2 v6.0.0 and my script is broken and I can't find wh
Typically you don't need to open the png() device manually. Try
comment out that line.
BTW, I'm not sure which wordcloud package you were using, but this one
is the best one I have seen: https://github.com/Lchiffon/wordcloud2
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On F
be reduced to the absolutely minimal:
\documentclass{article}
\begin{document}
<>=
plot(sin, -pi, 2*pi, main = "A stand alone TikZ plot", xlab = "x",
ylab = "sin(x)")
@
\end{document}
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Mon, Jan 18, 20
):
install.packages("tikzDevice", repos="https://cran.rstudio.com";)
# make sure your version of R supports https
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Fri, Jan 15, 2016 at 9:37 PM, Ranjan Maitra
wrote:
> On Fri, 15 Jan 2016 21:25:06 -0600 Ranjan Maitra
>
nyway, you may use
a custom function to do it. e.g.
cond_eval = function(x) {
if (isTRUE(knitr::opts_chunk$get('eval'))) x
}
Then `r cond_eval(x)` instead of `r x`.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Tue, Nov 10, 2015 at 4:40 AM, Witold E Wolski wrote:
> I do
html_document:
keep_md: yes
---
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Wed, Oct 21, 2015 at 7:21 AM, Jeff Newmiller
wrote:
> I think the default now is to not save them unless you set the fig.path chunk
> option.
>
> http://kbroman.org/knitr_knutshell/pages/Rm
ough for you to choose between knitr::pandoc()
and rmarkdown::render() :-)
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Wed, Sep 23, 2015 at 6:13 AM, Ryszard Czermiński
wrote:
> I am trying to use R Markdown, but call to render() gives me an error:
> Error: pandoc version 1.12
apt-get build-dep r-base-dev).
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Tue, Aug 11, 2015 at 8:32 AM, Ramiro Barrantes
wrote:
> Hello,
>
> I have the following reproducible knitr document:
>
> \documentclass{article}
> \usepackage[sc]{mathpazo}
> \usepackage[T1]{fo
Section 5.1.3 of the book "Dynamic Documents with R and knitr" is
titled "Global Options". I don't know how to make it more clear for
readers to find information on global options in the book.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Mon, Jul 20, 2015
in the end. When you see errors from parse(),
that often means the code is not syntactically correct.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Sat, Jul 11, 2015 at 7:07 PM, Rich Shepard wrote:
> On Sat, 11 Jul 2015, Yihui Xie wrote:
>
>> I guess you didn't tell us yo
opefully you learned some lessons on what a reproducible example
means.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Sat, Jul 11, 2015 at 9:03 AM, Rich Shepard wrote:
> On Fri, 10 Jul 2015, Yihui Xie wrote:
>
>> Your LyX example has two problems:
>
>
> Yihui, et a
o need to print() the plot, and no
need to pdf(), either. See the attached PDF I generated.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Fri, Jul 10, 2015 at 7:18 PM, Rich Shepard wrote:
> On Fri, 10 Jul 2015, David Winsemius wrote:
>
>> #Generally one needs to complete a pdf
There is no direct way to get it, but you can get 1) the input
filename via knitr::current_input(), and 2) the output format via
knitr::opts_knit$get('rmarkdown.pandoc.to'). You may be able to figure
out the output filename based on these two pieces of information.
Regards,
Yihui
--
in doubt, I always
check what MASS does:
http://cran.rstudio.com/web/packages/MASS/index.html Turns out its
description is not a complete sentence, either.
Sounds like R has become a language for statistical computing and
graphics, plus English grammar since 3.0.x.
Regards,
Yihui
--
Yihui Xie
W
sudo apt-get install libpng12-dev
I'm not sure about Ubuntu 12.04. You may need a different libpng??-dev.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Tue, May 26, 2015 at 2:10 AM, Gygli, Gudrun wrote:
>
> Dear All,
>
>
> I am using R to analyse computer s
m. You may also try to reinstall the package:
BiocInstaller::biocLite('IlluminaHumanMethylation450kanno.ilmn12.hg19')
---
output: pdf_document
---
```{r}
library(IlluminaHumanMethylation450kanno.ilmn12.hg19)
data(IlluminaHumanMethylation450kanno.ilmn12.hg19)
```
Regards,
Yihui
--
only way is to make a connection, such as textConnection()
as you mentioned.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Sat, Oct 25, 2014 at 10:58 AM, John Fox wrote:
> Dear Peter,
>
> Thanks for the suggestion -- it's a bit better for the example I provided
> th
pec}
\usepackage{xunicode}
\begin{document}
<<>>=
degree <- "°"
print(degree)
@
\end{document}
Similar things apply to ü. You need to specify the argument `encoding
= 'UTF-8'` when calling Sweave() or knitr::knit().
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.n
s": [{ "search": { "regex": true }, "targets": [0, 1, 2, 3, 4] }]
})
The global search box works, though.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Wed, Sep 3, 2014 at 2:09 PM, Charles Determan Jr wrote:
> Thank you Yihui, this would certainly w
u want, this
may or may not be enough.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Wed, Sep 3, 2014 at 7:12 AM, Charles Determan Jr wrote:
> Thank you for checking Yihui, on the off chance are you familiar with any
> other methods to filter on multiple conditions?
>
>
>
,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Tue, Sep 2, 2014 at 11:59 AM, Charles Determan Jr wrote:
> Greetings,
>
> I am currently exploring some capabilities of the 'Shiny' package. I am
> currently working with the most recent version of 'shiny' from
message so we do not have to imagine what could be wrong).
Anyway, at least you have to let your system know where is
pandoc-citeproc (per instructions above again), which may or may not
be the problem given the missing error message.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On
Yep, that is exactly the answer.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Fri, Aug 22, 2014 at 6:35 AM, Bart Kastermans wrote:
> On 22 Aug 2014, at 12:39, Duncan Murdoch wrote:
>
>> On 22/08/2014, 6:02 AM, Bart Kastermans wrote:
>>> I have a daily generated
Great.
I also said "I see the point of keeping prompts", and that is why the
chunk option prompt=TRUE is provided in knitr. I may not agree with
your preference, but that does not mean I should stop you completely
from having your own preference.
Regards,
Yihui
--
Yihui Xie
No. That is not my suggestion. Joshua Wiley correctly explained what I
was suggesting. Prompts are useful in the R console, but not
necessarily in a report.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Wed, Jul 30, 2014 at 6:47 PM, Duncan Murdoch
wrote:
> So your suggestion is t
with-command-prompts/)
Re Rich: yes, I'm aware of approaches of post-processing the prompts,
but this problem would not have existed in the first place if we do
not include prompts at all. I'm not sure if it makes much sense to
create some mess and clean it afterwards.
Regards,
Yihui
--
Yi
Not sure if you mean \newpage{}/\pagebreak{} in LaTeX. If that is the
case, it is possible but easy, and I do not understand why you want to
break a code chunk onto two pages. The easiest thing to do is just to
write two code chunks.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Wed
Yeah, it is just my personal opinion. Some users like it, and some do not.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Tue, Jul 29, 2014 at 5:36 PM, Peter Alspach
wrote:
> Kia ora Erin
>
> But beware - to quote from Yihui 2013 introduction to knitr
>
> "It is e
This is not a big problem. It just means your system does not have a
default program to open .swf files. If you associate, say, a movie
player, with .swf, this problem will go away.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Thu, May 29, 2014 at 6:04 AM, Cheryl Johnson
wrote
library(methods)
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Mon, May 26, 2014 at 9:48 AM, Witold E Wolski wrote:
> the same script which is not working with Rscript does work with R CMD BATCH.
>
> I thought the main difference between Rscript and R CMD BATCH is where
>
That means saveSWF() cannot find SWF Tools, and you should either put
it on PATH or provide its installation path. See `swftools` in
?animation::saveSWF
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Sat, May 17, 2014 at 9:25 AM, Cheryl Johnson
wrote:
> By using the animation pack
#x27;$\\check{Y}$')
dev.off()
system('pdflatex test-math.tex')
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Sat, Feb 22, 2014 at 9:29 PM, Ranjan Maitra
wrote:
> Hi,
>
> I am trying to put the expression which in LaTeX would be $\check Y$ as
> a label on th
Small minds discuss people
> (_)-(_) . Eleanor Roosevelt
>
> ~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
>
> __
> R-help@r-project.org mailing list
> https://st
n into the "correct list".
That said, in the spirit of a mailing list, please do not post an old
question in a new thread. I have just replied to your last question in
the other thread.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Mon, Feb 3, 2014 at 10:54 AM, Jeff Newmiller
wr
.Rprofile --
again, please read the documentation carefully.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Fri, Jan 31, 2014 at 6:18 PM, Jeff Johnson wrote:
> Yihui/Jeff,
>
> I'm trying to determine where the default CSS file is located as I don't see
> this in any o
Exactly. Please see RStudio documentation:
https://support.rstudio.com/hc/en-us/articles/200552186-Customizing-Markdown-Rendering
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Thu, Jan 30, 2014 at 10:57 AM, Jeff Newmiller
wrote:
> This sounds like a classic "you need to write
Please provide a minimal example -- are you using R Markdown or R
HTML? Both can produce HTML output:
http://yihui.name/knitr/demo/minimal/
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Wed, Jan 29, 2014 at 10:49 AM, Jeff Johnson wrote:
> Hi there,
> I'm currently usi
Similarly, you can split a large input document into child documents
in knitr, e.g.
<>=
@
You can comment out this chunk when you do not need it. Or control it
programmatically,
<>=
include_me = TRUE # or FALSE
@
<>=
@
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.
could be wrong with an example that works.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
On Fri, Jan 3, 2014 at 2:09 PM, Michael Friendly wrote:
> [Not sure if I should post this here, or on a another list, but will try
> here first...]
>
> For a book I'm writing using kn
attachment (not sure if
an Rnw document can get through), or a Github gist, or pastebin
instead, e.g. https://gist.github.com/yihui/8105762 Or ask on SO:
http://stackoverflow.com/questions/tagged/r
Now let's move back to the original question, to which I have no solution.
Regards,
Yihui
--
--
Yihui Xie
Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Sun, Nov 24, 2013 at 2:00 PM, Duncan Murdoch
wrote:
> On 13-11-24 2:04 PM, Yihui Xie wrote:
>>
>> I'm not aware of a discussion on this, but I would say no.
>
, and I truly appreciate it. I wrote
this with the future in mind, not the past. The past was good, and the
future can be better.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Sun, Nov 24, 2013 at 11:13 AM, Bert G
Yes, that is pretty much it. Setting the options useDingbats or
concordance is optional. You may or may not really need them. What is
essential is the knit() function.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
RStudio also uses a "script" to compile Rnw files to PDF; you can see
all the "magic" in the "Compile PDF" pane (next to your "Console"
pane) after you click the button "Compile PDF".
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
Department
guess is
<>=
whatever_your_figure_functions_are()
@
So please provide a minimal example, and avoid indefinite descriptions
like "seems" or "feels like" (in particular, "this should be easy"
made me feel my IQ suddenly dropped by 50%).
Regards,
Yihui
--
Yihui Xie
d symbol in "a b"
> `a b`
[1] 1 2
> %in%
Error: unexpected SPECIAL in "%in%"
> `%in%`
function (x, table)
match(x, table, nomatch = 0L) > 0L
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ame
`git clone`
(or whatever version control tools) and the whole website can be
rebuilt offline (normally via `make` or other simple commands).
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Tue, Sep 3, 2013 at 12:
ou can
show output so users do not really have to open R and run
example(foo), and you have comments/interactivity/Google Analytics,
etc... Rd is an excellent format for documenting function arguments
and showing quick examples, though.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
Depart
se: http://yihui.name/knitr/demo/editors/
>
> @Duncan: thanks for indicating the use of cat() instead of print(). However,
> due to the bug in Sweave pointed out by Yihui, replacing print by cat didn't
> help me.
>
> Thanks
> David
class{article}
\begin{document}
\Sexpr{sub("_", "_", version$platform)}
\end{document}
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Mon, Sep 2, 2013 at 2:18 PM, David Epstein
wrote:
&
kages). I'm not sure if that has changed or not. Michael's
repository has been working well for me (including many other R
packages that have system dependencies).
Regards,
Yihui
--
Yihui Xie
Phone: 206-667-4385 Web: http://yihui.name
Fred Hutchinson Cancer Research Center, Seattle
On Tue,
get it back to
CRAN, or if someone else can resurrect this great package and the
original author is willing to hand over the maintainership.
Regards,
Yihui
--
Yihui Xie
Phone: 206-667-4385 Web: http://yihui.name
Fred Hutchinson Cancer Research Center, Seattle
On Sat, Jul 27, 2013 at 6:49 PM,
understands R cannot understand markdown. I
understand you do not have control over your lab machines, but you
still have other options like your own laptop (if you do not like
RStudio, feel free to remove it and use your favorite editors after
you have got the idea).
Regards,
Yihui
--
Yihui Xie
s can support.
knitr and its website are open source; please feel free to improve
them if you find anything unclear:
http://yihui.name/en/2013/06/fix-typo-in-documentation/
Regards,
Yihui
--
Yihui Xie
Phone: 206-667-4385 Web: http://yihui.name
Fred Hutchinson Cancer Research Center, Seattle
On Thu
/knitr/demo/minimal/ (you must have read this page),
and more examples at https://github.com/yihui/knitr-examples
If you are asking about the internals of knitr, "Luke, use the
source": https://github.com/yihui/knitr Or for a more comprehensive
introduction, see http://www.crcpress.com/produc
I just realized this was also possible:
> assign('TRUE', FALSE)
> TRUE
[1] TRUE
> get('TRUE')
[1] FALSE
but it is probably a different story.
Regards,
Yihui
--
Yihui Xie
Phone: 206-667-4385 Web: http://yihui.name
Fred Hutchinson Cancer Research Center, Seattle
On
will lose the center alignment without display:block. The
difficulty comes from the fact that Markdown images are not put into
div containers as in HTML.
Regards,
Yihui
--
Yihui Xie
Phone: 206-667-4385 Web: http://yihui.name
Fred Hutchinson Cancer Research Center, Seattle
On Wed, Jun 19, 2013
knitr is not tied to RStudio, and I believe this StackOverflow post
can answer your question: http://stackoverflow.com/q/10646665/559676
Regards,
Yihui
--
Yihui Xie
Phone: 206-667-4385 Web: http://yihui.name
Fred Hutchinson Cancer Research Center, Seattle
On Wed, Jun 19, 2013 at 4:42 AM, Ista
ecent announcement of softImpute and
Tibshirani's covTest).
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Fri, Apr 5, 2013 at 12:55 PM, Frank Harrell wrote:
> Does anyone know of R functi
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Tue, Mar 26, 2013 at 12:30 PM, Duncan Murdoch
wrote:
> On 26/03/2013 12:26 PM, Marcus Nunes wrote:
>>
>> Hello all,
>>
>&g
te or have any questions, please follow these links.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
___
R-packages mailing list
r-packa...@r-project
Please scroll down to Section 7: https://github.com/yihui/formatR/wiki
And this has been reported at
https://github.com/yihui/formatR/issues/26 I'll try to fix it after R
3.0 is released.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa
e label fig:figthree
You, as the author, only write the R code (instead of both R and
LaTeX); other people, as the readers, only see the R code. Everything
else should go behind the scene.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State Un
then work under
Windows.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Sun, Feb 10, 2013 at 12:02 PM, Michael Friendly wrote:
> [I'm not sure if this post should go to R-devel, but
I have a "minimal" package here based on roxygen2:
https://github.com/yihui/rmini
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Tue, Feb 5, 2013 at 11:49 PM, ivo welch wrote:
>
My short answer is to watch this video by Jeffrey Horner
http://youtu.be/ScV7XXlBZww and learn roxygen2.
And the long answer is to read the manual which has everything you
need: http://cran.r-project.org/doc/manuals/r-release/R-exts.html
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http
ooks, unless you want
to study the technical implementation of this package. For the default
hooks according to the output format, see
http://yihui.name/knitr/hooks and ?render_latex in the documentation.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statisti
e 0 R}%
\endgroup%
\fi}
\input{foo-concordance.tex}
<>=
opts_knit$set(concordance=TRUE)
@
\begin{document}
<<>>=
for (i in 1:5) {
print(i)
}
@
\end{document}
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State Univer
ihui/knitr
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Thu, Jan 10, 2013 at 6:51 AM, Francesco Sarracino
wrote:
> Dear R-listers,
>
> does anybody can suggest some manual where I can l
I believe RStudio has done a fairly good job in terms of the
synchronization. If you have to stick to TeXShop, I do not have any
ideas on how to make it work with Sweave child documents.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State
4, .1, .1))
})
opts_chunk$set(mypar = TRUE)
For par(bg=rgb(runif(1), runif(1), runif(1))), it is nothing but a
line of normal R code.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Wed, Jan 9, 2013
e relevant chunk)
And here is a preview: http://i.imgur.com/4lKpw.png
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Tue, Jan 8, 2013 at 4:17 AM, Francesco Sarracino
wrote:
> Dear R help
what
happened. All I can suggest in this case is to update R and run
update.packages() as indicated by FAQ1:
https://github.com/yihui/knitr/blob/master/FAQ.md
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ame
~ group)
library(estout)
eststo(reg1)
esttab()
@
\end{document}
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Sun, Dec 23, 2012 at 5:42 PM, Francesco Sarracino
wrote:
> Dear listers,
>
>
R users (especially Windows users)
how to install R packages via R CMD INSTALL or
devtools::install_github(). That is usually a lot faster than R-Forge.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames
is a subtle difference somewhere
between your Debian TeXLive and my Ubuntu TeXLive...
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Mon, Dec 3, 2012 at 9:29 AM, Shige Song wrote:
> All righ
, e.g. in this case you
will see
! LaTeX Error: Option clash for package preview.
The log file is at figure/fig1.log by default in your case.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On
Then you can take a look at the ggmap (on CRAN) or snippets package
(on Simon's RFroge: http://rforge.net/snippets/), which supports
OpenStreet Map; googleVis is HTML/SVG based.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State Unive
I'm not aware of the possibility of embedding google vis in PDF:
https://developers.google.com/chart/interactive/docs/gallery I do not
think everything has to live in PDF, otherwise what is the point of
HTML/JS and web browsers?
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web:
That is very helpful! Just to continue debugging, can you save the two
versions of the tex files produced from LyX with different versions of
R and do a diff on them? It sounds like something has changed from R
2.15.0 to 2.15.2.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http
I did not read every reply; perhaps someone has already mentioned
Shiny. There are a few live examples of "embedding R in HTML" here:
http://www.rstudio.com/shiny/
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
221
pure LaTeX problem. Letting MikTeX install
the missing LaTeX packages on the fly might solve the problem.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Thu, Nov 29, 2012 at 10:53 AM, Mark Lamias
z.Rnw
This allows you to generate R plots with font style consistent with
your main document. Two other examples:
https://github.com/downloads/yihui/knitr/knitr-manual.pdf and
https://github.com/downloads/yihui/knitr/knitr-graphics.pdf
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://
Petal.Length Petal.Width Species
1 5.10 3.50 1.40 0.20 setosa
2 4.90 3.00 1.40 0.20 setosa
\end{document}
It is not easy to write a document for both LaTeX and HTML, although
the R output can be easily converted to either LaTeX or HTML.
Regards,
Yihui
--
Yihui Xie
, file = 'yourfile.tex'); if you changed your
working directory before that, the tex file will be written to an
unexpected place.
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Mon, N
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