Re: [R] PDF form Rstudio

2016-02-25 Thread Thomas Petzoldt
Yes, you are right. Sweave depends on Latex too, so its no workaround in this case. Hope it helps, thpe Am 26.02.2016 um 06:54 schrieb Ulrik Stervbo: My understanding is that Sweave also depends on LaTeX to generate pdfs, so I am not sure Sweave is the solution. Just follow the advice given

Re: [R] PDF form Rstudio

2016-02-25 Thread Ulrik Stervbo
My understanding is that Sweave also depends on LaTeX to generate pdfs, so I am not sure Sweave is the solution. On Fri, 26 Feb 2016 at 05:52 Frederic Ntirenganya wrote: > Hi, > > If you are using Rstudio, why not using sweave function! I think this can > fix your problem since you don't have mi

Re: [R] PDF form Rstudio

2016-02-25 Thread Frederic Ntirenganya
Hi, If you are using Rstudio, why not using sweave function! I think this can fix your problem since you don't have miktex on your window machine. Cheers. On Feb 26, 2016 6:37 AM, "Ulrik Stervbo" wrote: > This message tells you what is wrong and the solution: > > No TeX installation detected (T

Re: [R] PDF form Rstudio

2016-02-25 Thread Ulrik Stervbo
This message tells you what is wrong and the solution: No TeX installation detected (TeX is required to create PDF output). You should install a recommended TeX distribution for your platform: LaTeX is used to generate the pdfs, to you need to have installed on your system. To avoid problems late

Re: [R] PDF form Rstudio

2016-02-25 Thread Peter Alspach
So, do you have MikTeK installed (assuming you are using Windows)? Peter Alspach -Original Message- From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Alnazer Elbedairy Sent: Friday, 26 February 2016 5:13 p.m. To: Erin Hodgess Cc: r-help mailing list Subject: Re: [R] PDF f

Re: [R] PDF form Rstudio

2016-02-25 Thread Alnazer Elbedairy
these are errors I got processing file: l...@m.rmd | | 6% ordinary text without R code | | 12% label: unnamed-chunk-1 |...

Re: [R] Scaling x axis

2016-02-25 Thread Jim Lemon
Hi Fabio, If you have more than a few dates on the X axis you may get overlapping tick labels. As an example, take a plot of the winning parties of by-elections held in Australia in the 21st century by the dates of the elections: be_dates<-as.Date(c("5/12/2015","19/09/2015","8/2/2014", "5/12/2009

Re: [R] Specify order of groups negative binomial (glm.nb)

2016-02-25 Thread Katharine Miller - NOAA Federal
Yes. relevel looks good! I will give that a try. Thanks! Katharine B. Miller, PhD Research Fisheries Biologist NMFS, Alaska Fisheries Science Center 17109 Lena Loop Rd Juneau, AK 99801 (907) 789-6410 (907) 789-6094 (fax) On Thu, Feb 25, 2016 at 2:12 PM, Bert Gunter wrote: > Ah yes. Forgot

Re: [R] Get object name inside lapply

2016-02-25 Thread Ben Tupper
Hi, Using your example (note I called the list 'z')... z <-list(a = seq(1:5), b = seq(10:20)) I picture lapply as extracting each element of z like this z[[i]] - the `[[` extracts the ith value from the context of residing in a list - hence it's name is 'lost' in the new context. That's diffe

Re: [R] Get object name inside lapply

2016-02-25 Thread Aashish Jain
Why don't you simply use names(c) to get the names of all objects? If, for your purposes, you still want the "names" function inside lapply, you can use the following: unlist(lapply(1:length(c), function(x) names(c[x]))) This will produce exactly same output as names(c) would. When you use lapply(c

Re: [R] PDF form Rstudio

2016-02-25 Thread Erin Hodgess
What's the error? You have to show it and the Rmd too, please. On Thu, Feb 25, 2016 at 5:35 PM, Alnazer Elbedairy < alnazer.elbeda...@gmail.com> wrote: > Dear All > I did the following steps to get a PDF file from Rstudio > 1- activate Rmarkdown > 2- save file as (name.Rmd) > 3- use chunk for

[R] PDF form Rstudio

2016-02-25 Thread Alnazer Elbedairy
Dear All I did the following steps to get a PDF file from Rstudio 1- activate Rmarkdown 2- save file as (name.Rmd) 3- use chunk for each step 4- go to Knit - PDF to save a file as PDF but I got an error any help please [[alternative HTML version deleted]] _

Re: [R] Get object name inside lapply

2016-02-25 Thread Rolf Turner
On 26/02/16 11:37, Huzefa Khalil wrote: If you want the object names, you should use lapply over the names: lapply(names(c), function(x) {c[[x]]}) This makes no sense at all to me; you get the same result simply by typing "c". If the OP's message is interpreted literally, all he needs to do

Re: [R] Specify order of groups negative binomial (glm.nb)

2016-02-25 Thread Bert Gunter
Ah yes. Forgot about relevel(). That would be simpler. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Thu, Feb 25, 2016 at 1:19 PM, Marc Schwart

Re: [R] Get object name inside lapply

2016-02-25 Thread Huzefa Khalil
If you want the object names, you should use lapply over the names: lapply(names(c), function(x) {c[[x]]}) On Thu, Feb 25, 2016 at 5:25 PM, Uwe Ligges wrote: > > > On 25.02.2016 22:27, Mohammad Tanvir Ahamed via R-help wrote: > >> Hello, >> >> I want to get object name of a list inside lapply >

Re: [R] Get object name inside lapply

2016-02-25 Thread Uwe Ligges
On 25.02.2016 22:27, Mohammad Tanvir Ahamed via R-help wrote: Hello, I want to get object name of a list inside lapply c<-list(a=seq(1:5),b=seq(10:20)) lapply(c,names) $a NULL $b NULL Why NULL ? Why should it? seq(1:5) has no names, nor has seq(10:20). Best, Uwe Ligges but i am

Re: [R] Get object name inside lapply

2016-02-25 Thread Sarah Goslee
Posting in HTML makes it much harder for people to figure out your code. Maybe this will help: > c<-list(a=seq(1:5),b=seq(10:20)) > c[[1]] [1] 1 2 3 4 5 > c[[2]] [1] 1 2 3 4 5 6 7 8 9 10 11 > names(c[[1]]) NULL > names(c[[2]]) NULL On Thu, Feb 25, 2016 at 4:15 PM, Mohammad Tanvir Aha

[R] Get object name inside lapply

2016-02-25 Thread Mohammad Tanvir Ahamed via R-help
Hello, I want to get object name of a list inside lapply > c<-list(a=seq(1:5),b=seq(10:20)) > lapply(c,names) $a NULL $b NULL Why NULL ? but i am expecting the names of object . Any help will be appreciated . I want to grab the names of object inside lapply for further process. Th

Re: [R] Need help in installing packages in R

2016-02-25 Thread Frans Marcelissen
Three remarks: 1. 'Install.Packages=="RODBC"' does nothing. Where did you find that? The command is install.packages("RODBC") 2. Sometimes it is a good idea to start reading a manual. 3. Please do not post in html Frans 2016-02-25 17:11 GMT+01:00 Bhavani Akila : > Hi, > > I have just started lea

Re: [R] Specify order of groups negative binomial (glm.nb)

2016-02-25 Thread Marc Schwartz
Hi, Well...as I understand the question: If Katharine wants to use treatment contrasts, which are the default, the easiest thing to do may be use to ?relevel to specify the reference level for the IV factor. However, as Bert notes, there are other contrasts that can be used, which would affec

[R] Get object name inside lapply

2016-02-25 Thread Mohammad Tanvir Ahamed via R-help
Hello,  I want to get object name of a list inside lapply > c<-list(a=seq(1:5),b=seq(10:20))> lapply(c,names)$aNULL $bNULL Why NULL ?  but i am expecting the names of object . Any help will be appreciated .  I want to grab the names of object inside lapply for further process.  Thanks .   Tanvir A

[R] Specify order of groups negative binomial (glm.nb)

2016-02-25 Thread Katharine Miller - NOAA Federal
Hi, I am using the glm.nb function to evaluate differences in the catch of individual species of fish across three river tributaries. The dependent variable is catch per unit effort (CPUE), and the independent variable is the the tributary (Trib_cat). CPUE is derived from the fish counts divided

Re: [R] [FORGED] Need help in installing packages in R

2016-02-25 Thread Rolf Turner
On 26/02/16 05:11, Bhavani Akila wrote: Hi, I have just started learning about "R" programming language. I tried to connect it to SQL server using "RODBC". On trying to install packages in R with the command Eg., 'Install.Packages=="RODBC"', the zip file is not getting downloaded as am not able

Re: [R] Specify order of groups negative binomial (glm.nb)

2016-02-25 Thread Bert Gunter
You can re-set the contrasts for the factor, though whether this is "easier" is a matter of personal preference. See ?C or ?contrasts, which I understand to be alternative ways of doing the same thing (and would appreciate correction is this is wrong). Or this can be done through the "contrasts" a

[R] bootstrap glm

2016-02-25 Thread Hassan, Nazatulshima
Hi I have a data with an outcome,Y and 10 predictors (X1-X10). My aim is to fit a logistic model to each of the predictors and calculate the deviance difference (dDeviance). And later on bootstrapping the dDeviance for 100 times (R=100). I tried the following function. It is calculating the origi

[R] Need help in installing packages in R

2016-02-25 Thread Bhavani Akila
Hi, I have just started learning about "R" programming language. I tried to connect it to SQL server using "RODBC". On trying to install packages in R with the command Eg., 'Install.Packages=="RODBC"', the zip file is not getting downloaded as am not able to access to the webpage since am working

Re: [R] KNN

2016-02-25 Thread Alnazer Elbedairy
Dear All Divide (same dataset) into 10 folds fold1 <- nautaData[1:39] fold2 <- nautaData[40:79] fold3 <- nautaData[80:119] fold4 <- nautaData[120:159] fold5 <- nautaData[160:199] fold6 <- nautaData[200:239] fold7 <- nautaData[240:279] fold8 <- nautaData[280:319] fold9 <- nautaData[320:359] fold10 <

Re: [R] Scaling x axis

2016-02-25 Thread PIKAL Petr
Hi you do not say which type of plot you use so I presume it is some base plot. you can use axes=FALSE when you plot your data and change axis by axis() command see ?axis Cheers Petr > -Original Message- > From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Fabio > Mo

Re: [R] KNN

2016-02-25 Thread Ben Tupper
Hi, Do the knn() or knn1() functions in the 'class' package serve your purpose? https://cran.r-project.org/web/packages/class/index.html Ben > On Feb 25, 2016, at 9:49 AM, David L Carlson wrote: > > Perhaps Alnazer is trying to implement "majority vote" kNN: > >> From Wikipedia > (https://e

Re: [R] getDLLRegisteredRoutines

2016-02-25 Thread Duncan Murdoch
On 25/02/2016 9:42 AM, MAURICE Jean - externe wrote: Hi, I have built a DLL with some routines using Intel's FORTRAN. I can use the routines within a R script. I would like to have the list of all the routines in the DLL. I found getDLLRegisteredRoutines but it answers data frame with 0 colum

Re: [R] KNN

2016-02-25 Thread Alnazer
Appreciated Jim. Alnazer Elbedairy > On Feb 25, 2016, at 4:15 AM, Jim Lemon wrote: > > Hi Alnazer, > I'm not surprised that it didn't do what you expected. Even if I clean > up the code so that it will actually run: > > majorityGuessing<-function(trainingData,categories) { > GuessMPG<-sample(

Re: [R] Scaling x axis

2016-02-25 Thread Duncan Murdoch
On 25/02/2016 7:31 AM, Fabio Monteiro wrote: Hi i'm trying to plot my data in R and i can't manage to scale the x axis. My x axis are dates, months and years, and when I plot I only have the x axis like this (2002, 2004, 2006, 2008, 2010). I whant every date in the axis not only those years, i

[R] Scaling x axis

2016-02-25 Thread Fabio Monteiro
Hi i'm trying to plot my data in R and i can't manage to scale the x axis. My x axis are dates, months and years, and when I plot I only have the x axis like this (2002, 2004, 2006, 2008, 2010). I whant every date in the axis not only those years, i want to see every point with the respectively

Re: [R] KNN

2016-02-25 Thread David L Carlson
Perhaps Alnazer is trying to implement "majority vote" kNN: >From Wikipedia (https://en.wikipedia.org/wiki/K-nearest_neighbors_algorithm): In k-NN classification, the output is a class membership. An object is classified by a majority vote of its neighbors, with the object being assigned to the

[R] getDLLRegisteredRoutines

2016-02-25 Thread MAURICE Jean - externe
Hi, I have built a DLL with some routines using Intel's FORTRAN. I can use the routines within a R script. I would like to have the list of all the routines in the DLL. I found getDLLRegisteredRoutines but it answers data frame with 0 column and 0 lines. What is wrong ? Thanks in advance Jean

Re: [R] distribution freq

2016-02-25 Thread Duncan Murdoch
On 25/02/2016 6:36 AM, catalin roibu wrote: Dear all! I want to apply gamma distribution to a data set. I obtained ty pdf values and I want to transform this values in absolute frequencies. I used dgamma, without success. Please help me to solve this problem. It's not clear what you want to do

[R] distribution freq

2016-02-25 Thread catalin roibu
Dear all! I want to apply gamma distribution to a data set. I obtained ty pdf values and I want to transform this values in absolute frequencies. I used dgamma, without success. Please help me to solve this problem. Best regards! CR -- - - Catalin-Constantin ROIBU ​ Lecturer PhD, Forestry engi

Re: [R] KNN

2016-02-25 Thread Jim Lemon
Hi Alnazer, I'm not surprised that it didn't do what you expected. Even if I clean up the code so that it will actually run: majorityGuessing<-function(trainingData,categories) { GuessMPG<-sample(1:length(categories),nrow(trainingData),replace=TRUE) return(GuessMPG) } and call it like this (ass

Re: [R] colors in facet ggplot and geom_bar

2016-02-25 Thread efisio solazzo
Dear, Ok...I thought a hint would have been sufficient, but I'm still stuck. based on the 'Data' dataframe: Data mod_names err_typevalue spec_comp sign.value pos 1 mod1 var 2.970681e-03ID - 1.485341e-03 2 mod1 mMSE 1.881598e-01

Re: [R] Problems with the deSolve package

2016-02-25 Thread Thomas Petzoldt
Hi, to diagnose your problem, I tried the model with your original parameters, using a Runge-Kutta fixed step integrator and smaller time steps. You may try to make them even smaller. rk4 has no warranted accuracy, so it is less reliable than "lsoda" etc. However, it can be useful for debugg